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PI0018323 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018323
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr06:12804989..12805738
RNA-Seq ExpressionPI0018323
SyntenyPI0018323
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025369.1 uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa]6.1e-8568.77Show/hide
Query:  MTQSSNQELHFFEDLNREVRRIRRERREENILN--IPLDPIENQEPNLEY---PNLDREDMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLGLI
        MT+SSN +  +FEDLNREVRRIRRERREEN ++     +P+   EP+L+    PNL R ++G+VREKTLREL+EPDEDQRPLCIVIP TTQPFELK GLI
Subjt:  MTQSSNQELHFFEDLNREVRRIRRERREENILN--IPLDPIENQEPNLEY---PNLDREDMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLGLI

Query:  HLLPIYKGSSGEDPHKHLKDFHMVCDSMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFGES
        HLL I+KGS GED HKHLKDFHMVC SMRPH +SEEQLNLRAFPF L D AKRWLYYLEP  ITTW SLKKKFLEKFFPASRANNI+KEIYGIRQAFGES
Subjt:  HLLPIYKGSSGEDPHKHLKDFHMVCDSMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFGES

Query:  LSEYWE-------------------------------RNTVDAAAGGALADKT
        LSEYWE                               RNTVD AAGGALADKT
Subjt:  LSEYWE-------------------------------RNTVDAAAGGALADKT

KAA0031967.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-8569.29Show/hide
Query:  MTQSSNQELHFFEDLNREVRRIRRERREENILNIP----LDPIENQEPNLEY---PNLDREDMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLG
        MT+SSN E  +FEDLN+EVRRIRRERREEN  NIP     +P+   EP+L+    PNL R +MG+VREKT+R+L E DEDQRPLCIVI  TTQPFELK  
Subjt:  MTQSSNQELHFFEDLNREVRRIRRERREENILNIP----LDPIENQEPNLEY---PNLDREDMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLG

Query:  LIHLLPIYKGSSGEDPHKHLKDFHMVCDSMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFG
        LIHLLPI+KG+SGEDPHKHLKDFHMVCDSMRPH +SEEQLNLRAFPFSL D AKRWLYYLEPGSITTWGSLKKKFLEKFFPASR NNI+KEIYGIRQAFG
Subjt:  LIHLLPIYKGSSGEDPHKHLKDFHMVCDSMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFG

Query:  ESLSEYWE-------------------------------RNTVDAAAGGALADK
        ESL +YWE                               RNTVDAAAGGALA+K
Subjt:  ESLSEYWE-------------------------------RNTVDAAAGGALADK

KAA0054379.1 uncharacterized protein E6C27_scaffold24G001140 [Cucumis melo var. makuwa]1.1e-7568.72Show/hide
Query:  RREENILNIP-LDPIENQEPNLEYP---NLDREDMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLGLIHLLPIYKGSSGEDPHKHLKDFHMVCD
        R E NILN+   +P+   EP+L+ P   NL R +MG+VRE TLREL++PDEDQRPLCIVIPPTTQPFELK GLIH L I+KGSS ED HKHLKDFHMVCD
Subjt:  RREENILNIP-LDPIENQEPNLEYP---NLDREDMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLGLIHLLPIYKGSSGEDPHKHLKDFHMVCD

Query:  SMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFGESLSEYWE--------------------
        SMRPH +SEEQLNLRAFPFSL D AKRWLYYLE GSITTWGSLKKKFLEK FPASR NN +KEIYGIRQAFGESLSEYWE                    
Subjt:  SMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFGESLSEYWE--------------------

Query:  -----------RNTVDAAAGGALADKT
                   RNTVDAAAGGALA+KT
Subjt:  -----------RNTVDAAAGGALADKT

KAA0058150.1 uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa]3.7e-7475.13Show/hide
Query:  MGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLGLIHLLPIYKGSSGEDPHKHLKDFHMVCDSMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEP
        MG+VREK LREL+EP+ED RPLCIVIPPTTQPFELK GLIHLLPI+KGSSGEDPHKHLKDFHMVCDSMRP+ +SEEQLNLRAFPF L D AK WLYYLEP
Subjt:  MGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLGLIHLLPIYKGSSGEDPHKHLKDFHMVCDSMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEP

Query:  GSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFGESLSEYWE-------------------------------RNTVDAAAGGALADKT
        GSITTWGSLKKKFLEKFFPASRANNI+KEIYGIRQAFGESLS+YWE                               RNTVDAA GGALADKT
Subjt:  GSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFGESLSEYWE-------------------------------RNTVDAAAGGALADKT

KAA0058334.1 uncharacterized protein E6C27_scaffold409G00180 [Cucumis melo var. makuwa]1.2e-8076.81Show/hide
Query:  MTQSSNQELHFFEDLNREVRRIRRERREEN-ILNIP-LDPIENQEPNLEY---PNLDREDMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLGLI
        MT SSN E  +FEDLNREVR I+RERREEN I N+   +P+   EP+L+    PNL R +M +VREKTLREL+EP+EDQRPLC+VIPPTTQPFELK  LI
Subjt:  MTQSSNQELHFFEDLNREVRRIRRERREEN-ILNIP-LDPIENQEPNLEY---PNLDREDMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLGLI

Query:  HLLPIYKGSSGEDPHKHLKDFHMVCDSMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFGES
        HLLPI+KG+ GEDPHKHLK FHMVCDSMRPH +S+EQLNLRAFPFSL D AKRW YYLE GSITTWGSLKKKFLEKFF AS+ANNI+KEIYGIRQAFGES
Subjt:  HLLPIYKGSSGEDPHKHLKDFHMVCDSMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFGES

Query:  LSEYWER
        LSEYWER
Subjt:  LSEYWER

TrEMBL top hitse value%identityAlignment
A0A5A7SRF5 Retrotransposon gag protein7.7e-8669.29Show/hide
Query:  MTQSSNQELHFFEDLNREVRRIRRERREENILNIP----LDPIENQEPNLEY---PNLDREDMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLG
        MT+SSN E  +FEDLN+EVRRIRRERREEN  NIP     +P+   EP+L+    PNL R +MG+VREKT+R+L E DEDQRPLCIVI  TTQPFELK  
Subjt:  MTQSSNQELHFFEDLNREVRRIRRERREENILNIP----LDPIENQEPNLEY---PNLDREDMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLG

Query:  LIHLLPIYKGSSGEDPHKHLKDFHMVCDSMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFG
        LIHLLPI+KG+SGEDPHKHLKDFHMVCDSMRPH +SEEQLNLRAFPFSL D AKRWLYYLEPGSITTWGSLKKKFLEKFFPASR NNI+KEIYGIRQAFG
Subjt:  LIHLLPIYKGSSGEDPHKHLKDFHMVCDSMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFG

Query:  ESLSEYWE-------------------------------RNTVDAAAGGALADK
        ESL +YWE                               RNTVDAAAGGALA+K
Subjt:  ESLSEYWE-------------------------------RNTVDAAAGGALADK

A0A5A7ULP9 Retrotrans_gag domain-containing protein5.6e-7668.72Show/hide
Query:  RREENILNIP-LDPIENQEPNLEYP---NLDREDMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLGLIHLLPIYKGSSGEDPHKHLKDFHMVCD
        R E NILN+   +P+   EP+L+ P   NL R +MG+VRE TLREL++PDEDQRPLCIVIPPTTQPFELK GLIH L I+KGSS ED HKHLKDFHMVCD
Subjt:  RREENILNIP-LDPIENQEPNLEYP---NLDREDMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLGLIHLLPIYKGSSGEDPHKHLKDFHMVCD

Query:  SMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFGESLSEYWE--------------------
        SMRPH +SEEQLNLRAFPFSL D AKRWLYYLE GSITTWGSLKKKFLEK FPASR NN +KEIYGIRQAFGESLSEYWE                    
Subjt:  SMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFGESLSEYWE--------------------

Query:  -----------RNTVDAAAGGALADKT
                   RNTVDAAAGGALA+KT
Subjt:  -----------RNTVDAAAGGALADKT

A0A5A7USL5 Retrotrans_gag domain-containing protein1.8e-7475.13Show/hide
Query:  MGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLGLIHLLPIYKGSSGEDPHKHLKDFHMVCDSMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEP
        MG+VREK LREL+EP+ED RPLCIVIPPTTQPFELK GLIHLLPI+KGSSGEDPHKHLKDFHMVCDSMRP+ +SEEQLNLRAFPF L D AK WLYYLEP
Subjt:  MGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLGLIHLLPIYKGSSGEDPHKHLKDFHMVCDSMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEP

Query:  GSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFGESLSEYWE-------------------------------RNTVDAAAGGALADKT
        GSITTWGSLKKKFLEKFFPASRANNI+KEIYGIRQAFGESLS+YWE                               RNTVDAA GGALADKT
Subjt:  GSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFGESLSEYWE-------------------------------RNTVDAAAGGALADKT

A0A5A7UT28 Retrotrans_gag domain-containing protein5.7e-8176.81Show/hide
Query:  MTQSSNQELHFFEDLNREVRRIRRERREEN-ILNIP-LDPIENQEPNLEY---PNLDREDMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLGLI
        MT SSN E  +FEDLNREVR I+RERREEN I N+   +P+   EP+L+    PNL R +M +VREKTLREL+EP+EDQRPLC+VIPPTTQPFELK  LI
Subjt:  MTQSSNQELHFFEDLNREVRRIRRERREEN-ILNIP-LDPIENQEPNLEY---PNLDREDMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLGLI

Query:  HLLPIYKGSSGEDPHKHLKDFHMVCDSMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFGES
        HLLPI+KG+ GEDPHKHLK FHMVCDSMRPH +S+EQLNLRAFPFSL D AKRW YYLE GSITTWGSLKKKFLEKFF AS+ANNI+KEIYGIRQAFGES
Subjt:  HLLPIYKGSSGEDPHKHLKDFHMVCDSMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFGES

Query:  LSEYWER
        LSEYWER
Subjt:  LSEYWER

A0A5D3DIP6 Retrotrans_gag domain-containing protein2.9e-8568.77Show/hide
Query:  MTQSSNQELHFFEDLNREVRRIRRERREENILN--IPLDPIENQEPNLEY---PNLDREDMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLGLI
        MT+SSN +  +FEDLNREVRRIRRERREEN ++     +P+   EP+L+    PNL R ++G+VREKTLREL+EPDEDQRPLCIVIP TTQPFELK GLI
Subjt:  MTQSSNQELHFFEDLNREVRRIRRERREENILN--IPLDPIENQEPNLEY---PNLDREDMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLGLI

Query:  HLLPIYKGSSGEDPHKHLKDFHMVCDSMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFGES
        HLL I+KGS GED HKHLKDFHMVC SMRPH +SEEQLNLRAFPF L D AKRWLYYLEP  ITTW SLKKKFLEKFFPASRANNI+KEIYGIRQAFGES
Subjt:  HLLPIYKGSSGEDPHKHLKDFHMVCDSMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFGES

Query:  LSEYWE-------------------------------RNTVDAAAGGALADKT
        LSEYWE                               RNTVD AAGGALADKT
Subjt:  LSEYWE-------------------------------RNTVDAAAGGALADKT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCAGTCTTCCAACCAAGAACTTCACTTTTTCGAAGACCTAAATAGGGAAGTGCGTAGGATTAGGAGAGAAAGGAGAGAAGAAAATATCCTTAACATCCCTCTAGA
TCCAATAGAAAACCAAGAGCCTAACCTAGAATATCCAAACCTTGATAGAGAAGATATGGGCCAAGTTAGAGAGAAAACCTTAAGAGAGCTTTCCGAGCCTGACGAGGACC
AAAGGCCCCTTTGCATTGTAATTCCCCCAACCACCCAACCTTTTGAACTCAAACTCGGACTAATCCATCTCTTACCAATATACAAGGGTAGTTCAGGAGAGGACCCCCAT
AAACACCTCAAAGACTTTCATATGGTTTGTGACTCTATGAGACCGCACAGAGTTTCAGAGGAACAACTTAACTTGAGAGCCTTCCCATTTTCTTTGATTGACACAGCCAA
AAGATGGCTTTACTACCTTGAGCCAGGGTCCATAACTACTTGGGGAAGCCTTAAAAAGAAATTTTTAGAAAAGTTCTTTCCTGCTTCAAGAGCCAATAATATTAAGAAAG
AAATCTACGGAATAAGGCAAGCTTTTGGGGAGTCTTTGTCTGAATACTGGGAAAGAAATACAGTAGATGCTGCAGCAGGTGGTGCTTTGGCTGACAAAACTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCCAGTCTTCCAACCAAGAACTTCACTTTTTCGAAGACCTAAATAGGGAAGTGCGTAGGATTAGGAGAGAAAGGAGAGAAGAAAATATCCTTAACATCCCTCTAGA
TCCAATAGAAAACCAAGAGCCTAACCTAGAATATCCAAACCTTGATAGAGAAGATATGGGCCAAGTTAGAGAGAAAACCTTAAGAGAGCTTTCCGAGCCTGACGAGGACC
AAAGGCCCCTTTGCATTGTAATTCCCCCAACCACCCAACCTTTTGAACTCAAACTCGGACTAATCCATCTCTTACCAATATACAAGGGTAGTTCAGGAGAGGACCCCCAT
AAACACCTCAAAGACTTTCATATGGTTTGTGACTCTATGAGACCGCACAGAGTTTCAGAGGAACAACTTAACTTGAGAGCCTTCCCATTTTCTTTGATTGACACAGCCAA
AAGATGGCTTTACTACCTTGAGCCAGGGTCCATAACTACTTGGGGAAGCCTTAAAAAGAAATTTTTAGAAAAGTTCTTTCCTGCTTCAAGAGCCAATAATATTAAGAAAG
AAATCTACGGAATAAGGCAAGCTTTTGGGGAGTCTTTGTCTGAATACTGGGAAAGAAATACAGTAGATGCTGCAGCAGGTGGTGCTTTGGCTGACAAAACTGGCTGA
Protein sequenceShow/hide protein sequence
MTQSSNQELHFFEDLNREVRRIRRERREENILNIPLDPIENQEPNLEYPNLDREDMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKLGLIHLLPIYKGSSGEDPH
KHLKDFHMVCDSMRPHRVSEEQLNLRAFPFSLIDTAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRANNIKKEIYGIRQAFGESLSEYWERNTVDAAAGGALADKTG