; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0018336 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018336
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr04:23449707..23451490
RNA-Seq ExpressionPI0018336
SyntenyPI0018336
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]6.8e-6583.55Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQ
        MTTLLTSFVQG PLKV KCGVC LVGHPNDKCPE+ +DVN +R YDP+ NT NSGWRDNPNLRWGNDNQK TQA  +SSNQG NLEDI+K LATNTLSFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKK
        QEMKQQMTQLTTAISK++GKGKLPAQPDYANVSAISLRSGKIL+TP+++EKK
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-6482.89Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQ
        MTTLLTSFVQG PLKV KCGVCGLVGHPNDKCPE+ +DVN +R YDPH NT NSGWRDNPNLRWGNDNQK TQA S+SSNQG NLEDI+K LATNTLSFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKK
        QEMKQQMTQLTTAISK++GKGKL AQ +YANVSA+SLRSGKIL+TP+++EKK
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKK

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-6481.13Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQ
        MTTLLTSFVQG P KV KCGVCGLVGHPNDKC ++ +DVN +R YDPH NT NSGWRDNPNLRWGNDNQK TQA S+SSNQG NLEDI+K L TNTLSFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKKDNPLEE
        QEMKQQMTQLTTAISK++GKGKLPAQPDYANVSAISLRSGKIL+TP++ E+KK+ P EE
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKKDNPLEE

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.8e-6382.78Show/hide
Query:  TTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQQ
        TTLLTSFVQG PLKV KCGVCGLVGH N+KCPE+ +DVN +R YDPH NT NSGWRDNPNLRWGNDNQK TQA S+SSNQG NLEDI+K LATNTLSFQQ
Subjt:  TTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQQ

Query:  EMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKK
        EMKQQMTQLTTAISK++GKGKLPAQ D+ANVSAISLRSGKIL+TP+++EKK
Subjt:  EMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKK

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-6382.24Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQ
        MTTLLTSFVQG P KV KCGVCGLVGHPNDKCP++ +DVN +R YDPH NT NSGWRDN NLRWGNDNQK TQA S+SSNQG NLEDI+K LATNTLSFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKK
        Q+MKQQMTQLTTAISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP+++EKK
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKK

TrEMBL top hitse value%identityAlignment
A0A5A7V0Q7 Retrotransposon gag protein7.3e-6581.13Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQ
        MTTLLTSFVQG P KV KCGVCGLVGHPNDKC ++ +DVN +R YDPH NT NSGWRDNPNLRWGNDNQK TQA S+SSNQG NLEDI+K L TNTLSFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKKDNPLEE
        QEMKQQMTQLTTAISK++GKGKLPAQPDYANVSAISLRSGKIL+TP++ E+KK+ P EE
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSS-EEKKDNPLEE

A0A5A7VQ60 Retrotransposon gag protein1.4e-6382.78Show/hide
Query:  TTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQQ
        TTLLTSFVQG PLKV KCGVCGLVGH N+KCPE+ +DVN +R YDPH NT NSGWRDNPNLRWGNDNQK TQA S+SSNQG NLEDI+K LATNTLSFQQ
Subjt:  TTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQQ

Query:  EMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKK
        EMKQQMTQLTTAISK++GKGKLPAQ D+ANVSAISLRSGKIL+TP+++EKK
Subjt:  EMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKK

A0A5D3CB46 Retrotransposon gag protein6.2e-6482.24Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQ
        MTTLLTSFVQG P KV KCGVCGLVGHPNDKCP++ +DVN +R YDPH NT NSGWRDN NLRWGNDNQK TQA S+SSNQG NLEDI+K LATNTLSFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKK
        Q+MKQQMTQLTTAISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP+++EKK
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKK

A0A5D3CRR8 Retrotransposon gag protein7.3e-6582.89Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQ
        MTTLLTSFVQG PLKV KCGVCGLVGHPNDKCPE+ +DVN +R YDPH NT NSGWRDNPNLRWGNDNQK TQA S+SSNQG NLEDI+K LATNTLSFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKK
        QEMKQQMTQLTTAISK++GKGKL AQ +YANVSA+SLRSGKIL+TP+++EKK
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKK

E5GBZ4 Retrotransposon gag protein3.3e-6583.55Show/hide
Query:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQ
        MTTLLTSFVQG PLKV KCGVC LVGHPNDKCPE+ +DVN +R YDP+ NT NSGWRDNPNLRWGNDNQK TQA  +SSNQG NLEDI+K LATNTLSFQ
Subjt:  MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQ

Query:  QEMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKK
        QEMKQQMTQLTTAISK++GKGKLPAQPDYANVSAISLRSGKIL+TP+++EKK
Subjt:  QEMKQQMTQLTTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACTCTTCTTACTTCTTTTGTGCAAGGAGGTCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTGGTTGGTCATCCAAATGACAAATGTCCCGAGTTGACCAA
GGATGTGAATGCTATTAGGATGTATGACCCCCATGATAATACATGCAATTCAGGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACAACCAAAAGCCCACCCAAG
CAACATCCTCATCTTCAAACCAAGGTATGAATCTTGAAGACATAGTCAAAACTTTAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTT
ACTACCGCCATAAGCAAGTTGGAAGGAAAAGGCAAGCTTCCGGCCCAACCGGACTATGCAAATGTGAGTGCCATCTCACTAAGAAGTGGTAAGATTCTTGAAACCCCTTC
TAGTGAAGAAAAAAAGGACAATCCACTTGAAGAAATCAAGGAATCATAA
mRNA sequenceShow/hide mRNA sequence
ATGACAACTCTTCTTACTTCTTTTGTGCAAGGAGGTCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTGGTTGGTCATCCAAATGACAAATGTCCCGAGTTGACCAA
GGATGTGAATGCTATTAGGATGTATGACCCCCATGATAATACATGCAATTCAGGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACAACCAAAAGCCCACCCAAG
CAACATCCTCATCTTCAAACCAAGGTATGAATCTTGAAGACATAGTCAAAACTTTAGCTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTT
ACTACCGCCATAAGCAAGTTGGAAGGAAAAGGCAAGCTTCCGGCCCAACCGGACTATGCAAATGTGAGTGCCATCTCACTAAGAAGTGGTAAGATTCTTGAAACCCCTTC
TAGTGAAGAAAAAAAGGACAATCCACTTGAAGAAATCAAGGAATCATAA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPELTKDVNAIRMYDPHDNTCNSGWRDNPNLRWGNDNQKPTQATSSSSNQGMNLEDIVKTLATNTLSFQQEMKQQMTQL
TTAISKLEGKGKLPAQPDYANVSAISLRSGKILETPSSEEKKDNPLEEIKES