CuGenDBv2

Gene ID	PI0018355
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	chr09:5943555..5944274
RNA-Seq Expression	PI0018355
Synteny	PI0018355
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

3.1e-74

61.54

Show/hide

Query:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDSNKS-EVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT
        MDY+SRL+ ++ +  KIKGV  + + NLTHLLFADDILLFVEDDE S ++ +    L +L S L+INLNKSTISPINV+A+RTE +AS+WGI  +FLPI 
Subjt:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDSNKS-EVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT

Query:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE
        YL  PLGGK ++ +FW N+ +KI KKL SWKY  +SKGGKITLI SSL SLPTY LSIFKAP    KNIE  WR+FLWKN  E    HL  W+KIT+ KE
Subjt:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE

Query:  KGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK
        KGGLGI+R+KD NFAL+ KWLWR+  E     +K
Subjt:  KGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK

KAA0041367.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

4.0e-74

61.54

Show/hide

Query:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDSNKS-EVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT
        MDY+SRL+ ++ +  KIKGV  + + NLTHLLFADDILLFVEDDE S ++ +    L +L S L+INLNKSTISPINV+A RTE +AS+WGI  +FLPI 
Subjt:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDSNKS-EVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT

Query:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE
        YL  PLGGK  + +FW N+ +KI KKL SWKY  +SKGGKITLI SSL SLPTY LSIFKAP    KNIE  WR+FLWKN  E    HL  W+KIT+PKE
Subjt:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE

Query:  KGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK
        +GGLGI+R+KD NFAL+ KWLWR+  E     +K
Subjt:  KGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK

TYK05764.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

9.3e-71

60.35

Show/hide

Query:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDS-NKSEVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT
        M ++  L+ +L    KIKGV   N+ NLTHLLFADDILLF ED+EDS N  +    L +L   LN+NLNKSTIS INV+  RT  VAS WG+  QF P +
Subjt:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDS-NKSEVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT

Query:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE
        YL  PL GKP+S  FWDNI +K+ KKL++WKY  +SKG KITLINS+L SLPTY LS+FKA A +YK+IE  WR+FLW + NE    HL RWS +T+PK 
Subjt:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE

Query:  KGGLGINRIKDKNFALMCKWLWRFYDE
        KGGLGINRIKD NFAL+ KWLWRF  E
Subjt:  KGGLGINRIKDKNFALMCKWLWRFYDE

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

6.9e-74

61.54

Show/hide

Query:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDSNKS-EVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT
        MDY+SRL+ ++ +  KIKGV  + + NLTHLLFADDILLFVEDDE S ++ +    L +L S L+INLNKSTISPINV+A+RTE +AS+WGI  +FLPI 
Subjt:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDSNKS-EVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT

Query:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE
        YL  PLGGK  + +FW N+ +KI KKL SWKY  +SKGGKITLI SSL SLPTY LSIFKAP    KNIE  WR+FLWKN  E    HL  W+KIT+ KE
Subjt:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE

Query:  KGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK
        KGGLGI+R+KD NFAL+ KWLWR+  E     +K
Subjt:  KGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]

9.0e-74

61.11

Show/hide

Query:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDSNKS-EVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT
        MDY+SRL+ ++ +  KIKGV  + + NLTHLLFADDILLFVEDDE S ++ +    L +L S L+INLNKSTISPINV+A+RTE +AS+WGI  +FLPI 
Subjt:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDSNKS-EVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT

Query:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE
        YL  PLGGK ++ +FW N+ +KI KKL SWKY  +SKGGKITLI SSL SLPTY LSIFK P    KNIE  WR+FLWKN  E    HL  W+KIT+ KE
Subjt:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE

Query:  KGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK
        KGGLGI+R+KD NFAL+ KWLWR+  E     +K
Subjt:  KGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein

4.4e-74

61.11

Show/hide

Query:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDSNKS-EVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT
        MDY+SRL+ ++ +  KIKGV  + + NLTHLLFADDILLFVEDDE S ++ +    L +L S L+INLNKSTISPINV+A+RTE +AS+WGI  +FLPI 
Subjt:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDSNKS-EVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT

Query:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE
        YL  PLGGK ++ +FW N+ +KI KKL SWKY  +SKGGKITLI SSL SLPTY LSIFK P    KNIE  WR+FLWKN  E    HL  W+KIT+ KE
Subjt:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE

Query:  KGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK
        KGGLGI+R+KD NFAL+ KWLWR+  E     +K
Subjt:  KGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK

A0A5A7TI93 LINE-1 retrotransposable element ORF2 protein

2.0e-74

61.54

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Query:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDSNKS-EVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT
        MDY+SRL+ ++ +  KIKGV  + + NLTHLLFADDILLFVEDDE S ++ +    L +L S L+INLNKSTISPINV+A RTE +AS+WGI  +FLPI 
Subjt:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDSNKS-EVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT

Query:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE
        YL  PLGGK  + +FW N+ +KI KKL SWKY  +SKGGKITLI SSL SLPTY LSIFKAP    KNIE  WR+FLWKN  E    HL  W+KIT+PKE
Subjt:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE

Query:  KGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK
        +GGLGI+R+KD NFAL+ KWLWR+  E     +K
Subjt:  KGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK

A0A5D3C384 LINE-1 retrotransposable element ORF2 protein

4.5e-71

60.35

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Query:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDS-NKSEVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT
        M ++  L+ +L    KIKGV   N+ NLTHLLFADDILLF ED+EDS N  +    L +L   LN+NLNKSTIS INV+  RT  VAS WG+  QF P +
Subjt:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDS-NKSEVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT

Query:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE
        YL  PL GKP+S  FWDNI +K+ KKL++WKY  +SKG KITLINS+L SLPTY LS+FKA A +YK+IE  WR+FLW + NE    HL RWS +T+PK 
Subjt:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE

Query:  KGGLGINRIKDKNFALMCKWLWRFYDE
        KGGLGINRIKD NFAL+ KWLWRF  E
Subjt:  KGGLGINRIKDKNFALMCKWLWRFYDE

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein

3.3e-74

61.54

Show/hide

Query:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDSNKS-EVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT
        MDY+SRL+ ++ +  KIKGV  + + NLTHLLFADDILLFVEDDE S ++ +    L +L S L+INLNKSTISPINV+A+RTE +AS+WGI  +FLPI 
Subjt:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDSNKS-EVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT

Query:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE
        YL  PLGGK  + +FW N+ +KI KKL SWKY  +SKGGKITLI SSL SLPTY LSIFKAP    KNIE  WR+FLWKN  E    HL  W+KIT+ KE
Subjt:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE

Query:  KGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK
        KGGLGI+R+KD NFAL+ KWLWR+  E     +K
Subjt:  KGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein

1.5e-74

61.54

Show/hide

Query:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDSNKS-EVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT
        MDY+SRL+ ++ +  KIKGV  + + NLTHLLFADDILLFVEDDE S ++ +    L +L S L+INLNKSTISPINV+A+RTE +AS+WGI  +FLPI 
Subjt:  MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDSNKS-EVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPIT

Query:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE
        YL  PLGGK ++ +FW N+ +KI KKL SWKY  +SKGGKITLI SSL SLPTY LSIFKAP    KNIE  WR+FLWKN  E    HL  W+KIT+ KE
Subjt:  YLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKE

Query:  KGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK
        KGGLGI+R+KD NFAL+ KWLWR+  E     +K
Subjt:  KGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

1.5e-15

30.16

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Query:  PLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKEKGGL
        P+  K ++   +  I +++  +++ W+   +S  G++TL  + L S+P + +S    P  +   ++   R FLW +  E+   HL +WSK+ +PK++GGL
Subjt:  PLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKEKGGL

Query:  GINRIKDKNFALMCKWLWRFYDEKKA
        G+   K  N AL+ K  WR   EK +
Subjt:  GINRIKDKNFALMCKWLWRFYDEKKA

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.6e-15

27.1

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Query:  VEANRTEDVASRWGIKVQFLPITYLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFL
        V+ N   D+   +      LP+ YL  PL  K ++ S +  + +KI+ ++  W   ++S  G++ LI+S + SL  + +S F+ P+   K I++    FL
Subjt:  VEANRTEDVASRWGIKVQFLPITYLDTPLGGKPLSASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFL

Query:  WKNQNEEGHTHLFRWSKITAPKEKGGLGINRIKDKN---------FALMCKWLWR
        W             WS +  PK++GGLGI  +K+ N            +  W+W+
Subjt:  WKNQNEEGHTHLFRWSKITAPKEKGGLGINRIKDKN---------FALMCKWLWR

AT4G29090.1 Ribonuclease H-like superfamily protein

1.1e-08

32.56

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Query:  VSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKEKGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK
        ++LPTY ++ F  P  V K I +   DF W+N+ E    H   W  ++  K +GG+G   I+  N AL+ K +WR     ++   K
Subjt:  VSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKEKGGLGINRIKDKNFALMCKWLWRFYDEKKAFKEK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGACTACCTCAGTAGACTAATCACAAATTTGGAGCAAAAAGGAAAAATTAAAGGTGTTATTTTCAAGAATGACTTCAACTTAACACACCTCCTTTTTGCGGATGACAT
CCTTCTTTTTGTGGAAGATGATGAAGACTCTAACAAATCTGAGGTTTACTATCCACTTATTGAACTTGTCTCTAGCCTCAATATAAATCTCAACAAATCCACTATTTCTC
CCATAAATGTTGAGGCTAACAGAACCGAAGATGTGGCTTCTAGATGGGGTATAAAAGTTCAGTTTCTTCCTATTACTTATTTGGACACTCCATTAGGGGGAAAACCCCTC
TCTGCATCTTTTTGGGATAACATTTCTGATAAAATACAGAAAAAACTAAATAGTTGGAAATACTTTTACATTTCCAAAGGGGGAAAAATCACTCTCATCAACTCCTCTCT
GGTTAGTTTGCCTACTTACCATTTGTCTATTTTCAAAGCTCCAGCCAGAGTCTACAAAAATATTGAAAATTATTGGAGGGATTTTTTGTGGAAAAATCAAAATGAAGAAG
GACATACTCATCTCTTCAGATGGTCTAAAATCACTGCTCCGAAAGAAAAAGGGGGTTTGGGGATTAACAGAATAAAGGATAAAAATTTTGCGCTGATGTGTAAATGGCTT
TGGAGATTTTATGATGAAAAAAAAGCCTTTAAGGAAAAAACTGATTGTGGCAAAATATGA

mRNA sequence

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Protein sequence

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MDYLSRLITNLEQKGKIKGVIFKNDFNLTHLLFADDILLFVEDDEDSNKSEVYYPLIELVSSLNINLNKSTISPINVEANRTEDVASRWGIKVQFLPITYLDTPLGGKPL
SASFWDNISDKIQKKLNSWKYFYISKGGKITLINSSLVSLPTYHLSIFKAPARVYKNIENYWRDFLWKNQNEEGHTHLFRWSKITAPKEKGGLGINRIKDKNFALMCKWL
WRFYDEKKAFKEKTDCGKI

PI0018355 (gene) of Melon (PI 482460) v1 genome