; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0018368 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018368
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr07:2206158..2207545
RNA-Seq ExpressionPI0018368
SyntenyPI0018368
Gene Ontology termsGO:0000373 - Group II intron splicing (biological process)
GO:0009658 - chloroplast organization (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily
IPR044190 - Protein THYLAKOID ASSEMBLY 8-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044536.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.1e-12292.98Show/hide
Query:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ
        MKSTL+GRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNI CGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAK TSKMEDVINTKLSRLLKADLFDALTELQ
Subjt:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ

Query:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI
        RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIM+MGKNKMIEMAEEVF KLRKDGLEPDTRAFNEM+GAYLQVDMIERA +TY LMIASGCTPDKLTFKI
Subjt:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI

Query:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTKG
        LIKNLEKF+EEFA+VVKKDC+EYLD PQKF N++GQK TTKG
Subjt:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTKG

KGN53003.1 hypothetical protein Csa_015115 [Cucumis sativus]9.6e-11690.46Show/hide
Query:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ
        MKSTL+G LQLHF QLGLRQNLTNRSL C TAAPPPNI CGLRKG  +PLG SRVPSNEAIQAVQSLKLAKSTSKMEDVINTKL RLLKADLFDAL+ELQ
Subjt:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ

Query:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI
        RQNELELSLQVFKFMQNEEW+EPDLRLYHGMIM+MGKNKMIEMAEEVF KLRKDGLEPDTRAFNEM+GAYLQVDMIERAVETY LMIASGCTPD+LTFKI
Subjt:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI

Query:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTK
        LIKNLEKFREEFAVVVKKDCNEYLD PQKF N++GQK TTK
Subjt:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTK

XP_004152311.2 pentatricopeptide repeat-containing protein At1g62350 [Cucumis sativus]9.6e-11690.46Show/hide
Query:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ
        MKSTL+G LQLHF QLGLRQNLTNRSL C TAAPPPNI CGLRKG  +PLG SRVPSNEAIQAVQSLKLAKSTSKMEDVINTKL RLLKADLFDAL+ELQ
Subjt:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ

Query:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI
        RQNELELSLQVFKFMQNEEW+EPDLRLYHGMIM+MGKNKMIEMAEEVF KLRKDGLEPDTRAFNEM+GAYLQVDMIERAVETY LMIASGCTPD+LTFKI
Subjt:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI

Query:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTK
        LIKNLEKFREEFAVVVKKDCNEYLD PQKF N++GQK TTK
Subjt:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTK

XP_008454079.1 PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis melo]5.3e-12292.56Show/hide
Query:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ
        MKSTL+GRLQLHFP+LGLRQNLTNRSLHCCTAAPPPNI CGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAK TSKMEDVINTKLSRLLKADLFDALTELQ
Subjt:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ

Query:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI
        RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIM+MGKNKMIEMAEEVF KLRKDGLEPDTRAFNEM+GAYLQVDMIERA +TY LMIASGCTPDKLTFKI
Subjt:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI

Query:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTKG
        LIKNLEKF+EEFA+VVKKDC EYLD PQKF N++GQK TTKG
Subjt:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTKG

XP_038878176.1 pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida]1.5e-11387.19Show/hide
Query:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ
        MKSTL+G LQ HFPQLGLRQ+LTN SLHCCTAAPPPNI CGLRKGL+KPLGRSRVPS EAIQAVQSLKLAKSTSKMEDVIN+KLSRLLKADLFDALTELQ
Subjt:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ

Query:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI
        RQNELELSLQVFKF+QNEEWYEPDLRLYHGMI++ GKNKMIEMAEE+F KL+KDGLEPD RAFNEM+GAYLQVDM+ERAVETY LM ASGCTPDKLTFKI
Subjt:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI

Query:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTKG
        LIKNLEKFREEFA VVKK+CN YLD P+KFLN+  QK T KG
Subjt:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTKG

TrEMBL top hitse value%identityAlignment
A0A0A0KU23 Uncharacterized protein4.7e-11690.46Show/hide
Query:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ
        MKSTL+G LQLHF QLGLRQNLTNRSL C TAAPPPNI CGLRKG  +PLG SRVPSNEAIQAVQSLKLAKSTSKMEDVINTKL RLLKADLFDAL+ELQ
Subjt:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ

Query:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI
        RQNELELSLQVFKFMQNEEW+EPDLRLYHGMIM+MGKNKMIEMAEEVF KLRKDGLEPDTRAFNEM+GAYLQVDMIERAVETY LMIASGCTPD+LTFKI
Subjt:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI

Query:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTK
        LIKNLEKFREEFAVVVKKDCNEYLD PQKF N++GQK TTK
Subjt:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTK

A0A1S3BX97 pentatricopeptide repeat-containing protein At1g62350-like2.6e-12292.56Show/hide
Query:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ
        MKSTL+GRLQLHFP+LGLRQNLTNRSLHCCTAAPPPNI CGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAK TSKMEDVINTKLSRLLKADLFDALTELQ
Subjt:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ

Query:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI
        RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIM+MGKNKMIEMAEEVF KLRKDGLEPDTRAFNEM+GAYLQVDMIERA +TY LMIASGCTPDKLTFKI
Subjt:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI

Query:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTKG
        LIKNLEKF+EEFA+VVKKDC EYLD PQKF N++GQK TTKG
Subjt:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTKG

A0A5A7TQZ8 Pentatricopeptide repeat-containing protein5.1e-12392.98Show/hide
Query:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ
        MKSTL+GRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNI CGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAK TSKMEDVINTKLSRLLKADLFDALTELQ
Subjt:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ

Query:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI
        RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIM+MGKNKMIEMAEEVF KLRKDGLEPDTRAFNEM+GAYLQVDMIERA +TY LMIASGCTPDKLTFKI
Subjt:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI

Query:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTKG
        LIKNLEKF+EEFA+VVKKDC+EYLD PQKF N++GQK TTKG
Subjt:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTKG

A0A5D3CZ95 Pentatricopeptide repeat-containing protein2.6e-12292.56Show/hide
Query:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ
        MKSTL+GRLQLHFP+LGLRQNLTNRSLHCCTAAPPPNI CGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAK TSKMEDVINTKLSRLLKADLFDALTELQ
Subjt:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ

Query:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI
        RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIM+MGKNKMIEMAEEVF KLRKDGLEPDTRAFNEM+GAYLQVDMIERA +TY LMIASGCTPDKLTFKI
Subjt:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI

Query:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTKG
        LIKNLEKF+EEFA+VVKKDC EYLD PQKF N++GQK TTKG
Subjt:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQKRTTKG

A0A6J1IY98 pentatricopeptide repeat-containing protein At1g62350-like3.4e-10683.12Show/hide
Query:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ
        MKSTL+GRLQLH PQLG RQNLTN +LHCCTA PPPNI CGLRKG +KPLG+SRVPS E+IQAVQSLKLAKS SKMEDVIN+KLSRLLKADLFDAL ELQ
Subjt:  MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQ

Query:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI
        RQNELELSLQVFKFM+NEEWYEPDL LYH MI +MGKNKMIEMAEEVF   ++DGLEPDTRAFNEM+GAYLQVDM+ERAVETY LM ASGCTPDKLTFKI
Subjt:  RQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKI

Query:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQK
        LIKNLE+FREEFA VVKK+C E+LD P+KFL +  QK
Subjt:  LIKNLEKFREEFAVVVKKDCNEYLDYPQKFLNNDGQK

SwissProt top hitse value%identityAlignment
A7LN87 Pentatricopeptide repeat-containing protein PPR5, chloroplastic4.3e-1027.32Show/hide
Query:  EAIQAVQSL--KLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGL
        EA + V+SL  + A    ++  V++  +  +     F    EL R++     L VF++MQ + WY  D  +Y  +I +MG+   I MA  +F ++R  G 
Subjt:  EAIQAVQSL--KLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGL

Query:  EPDTRAFNEMIGAYLQV-DMIERAVETYG----LMIASGCTPDKLTFKILIKNLEKFREEFAV-VVKKDCNEYLDYPQKFLNN
        +PDT  +N +IGA+L   D  +   +  G    +     C P  +T+ IL++   +  +   V ++ KD +E +  P  +  N
Subjt:  EPDTRAFNEMIGAYLQV-DMIERAVETYG----LMIASGCTPDKLTFKILIKNLEKFREEFAV-VVKKDCNEYLDYPQKFLNN

Q1PFH7 Pentatricopeptide repeat-containing protein At1g623501.3e-1730.97Show/hide
Query:  SNEAIQAVQSLKLAKSTS-KMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDG
        S E + A + LK  ++ S +++  I + +SRLLK+DL   L E QRQN++ L +++++ ++ E WY PD+  Y  M+M++ +NK ++  ++V+  L+K+ 
Subjt:  SNEAIQAVQSLKLAKSTS-KMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDG

Query:  LEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKILIKNLEKFRE
        +  D   F +++  +L  ++   A+  YG M  S   P  L F++++K L  + E
Subjt:  LEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKILIKNLEKFRE

Q9LVW6 Protein THYLAKOID ASSEMBLY 8, chloroplastic3.3e-1031.11Show/hide
Query:  NITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEP-DLRLYHGMIMIM
        +I CG R   + PL + R+ S EAIQ++QSLK A  T     +    L RL+K+DL   L EL RQ+   L++ V   ++ E  Y P DL LY  ++  +
Subjt:  NITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEP-DLRLYHGMIMIM

Query:  GKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASG-----CTPDKLTFKILIKNLEKFRE
         +NK  +  + +  ++       D +A  ++I A +  +  E  V  Y LM  SG        D+   ++L K L +  E
Subjt:  GKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASG-----CTPDKLTFKILIKNLEKFRE

Q9STF9 Protein THYLAKOID ASSEMBLY 8-like, chloroplastic8.7e-1932.7Show/hide
Query:  PLGR-SRVPSNEAIQAVQSLK-LAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEE
        PL R  ++   EA+  +  LK L +   K++  I T + RLLK D+   + EL+RQ E  L++++F+ +Q +EWY+PD+ +Y  +I+ + K+K ++ A  
Subjt:  PLGR-SRVPSNEAIQAVQSLK-LAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEE

Query:  VFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKILIKNL
        ++ K++K+ L PD++ + E+I  +L+      A+  Y  M+ S   P++L F++L+K L
Subjt:  VFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKILIKNL

Q9SV96 Pentatricopeptide repeat-containing protein At4g39620, chloroplastic4.8e-0928.16Show/hide
Query:  ITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINT--KLSRLLKAD-LFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMI
        ITCG     +K   R    S E    V    L    S  E ++ T  K  ++++ D  F    EL + ++    L+VF++MQ + WY PD  +Y  +I +
Subjt:  ITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINT--KLSRLLKAD-LFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMI

Query:  MGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETY-----GLMIASGCTPDKLTFKILIK
        MGK     MA  +F +++  G  PD   +N +I A+L      +A+E        +     C P+ +T+ IL++
Subjt:  MGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETY-----GLMIASGCTPDKLTFKILIK

Arabidopsis top hitse value%identityAlignment
AT1G62350.1 Pentatricopeptide repeat (PPR) superfamily protein8.9e-1930.97Show/hide
Query:  SNEAIQAVQSLKLAKSTS-KMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDG
        S E + A + LK  ++ S +++  I + +SRLLK+DL   L E QRQN++ L +++++ ++ E WY PD+  Y  M+M++ +NK ++  ++V+  L+K+ 
Subjt:  SNEAIQAVQSLKLAKSTS-KMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDG

Query:  LEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKILIKNLEKFRE
        +  D   F +++  +L  ++   A+  YG M  S   P  L F++++K L  + E
Subjt:  LEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKILIKNLEKFRE

AT3G27750.1 FUNCTIONS IN: molecular_function unknown2.4e-1131.11Show/hide
Query:  NITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEP-DLRLYHGMIMIM
        +I CG R   + PL + R+ S EAIQ++QSLK A  T     +    L RL+K+DL   L EL RQ+   L++ V   ++ E  Y P DL LY  ++  +
Subjt:  NITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEP-DLRLYHGMIMIM

Query:  GKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASG-----CTPDKLTFKILIKNLEKFRE
         +NK  +  + +  ++       D +A  ++I A +  +  E  V  Y LM  SG        D+   ++L K L +  E
Subjt:  GKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASG-----CTPDKLTFKILIKNLEKFRE

AT3G46870.1 Pentatricopeptide repeat (PPR) superfamily protein6.2e-2032.7Show/hide
Query:  PLGR-SRVPSNEAIQAVQSLK-LAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEE
        PL R  ++   EA+  +  LK L +   K++  I T + RLLK D+   + EL+RQ E  L++++F+ +Q +EWY+PD+ +Y  +I+ + K+K ++ A  
Subjt:  PLGR-SRVPSNEAIQAVQSLK-LAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEE

Query:  VFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKILIKNL
        ++ K++K+ L PD++ + E+I  +L+      A+  Y  M+ S   P++L F++L+K L
Subjt:  VFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKILIKNL

AT4G39620.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.4e-1028.16Show/hide
Query:  ITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINT--KLSRLLKAD-LFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMI
        ITCG     +K   R    S E    V    L    S  E ++ T  K  ++++ D  F    EL + ++    L+VF++MQ + WY PD  +Y  +I +
Subjt:  ITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINT--KLSRLLKAD-LFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMI

Query:  MGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETY-----GLMIASGCTPDKLTFKILIK
        MGK     MA  +F +++  G  PD   +N +I A+L      +A+E        +     C P+ +T+ IL++
Subjt:  MGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETY-----GLMIASGCTPDKLTFKILIK

AT5G09320.1 Vacuolar sorting protein 9 (VPS9) domain3.2e-2433.01Show/hide
Query:  KKPLGRSRVPSNEAIQAVQSLKLA----------------KSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHG
        +KPL R R+ S EAIQAVQ+LK A                 S++ ++ VI +K  RLLK D+   L EL RQNE  L+L+VF+ ++ E WY+P +R+Y  
Subjt:  KKPLGRSRVPSNEAIQAVQSLKLA----------------KSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHG

Query:  MIMIMGKNKMIEMAEEVFRKLRKD-GLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKILIKNLEKFRE-EFAVVVKKDCNEYLDYPQ
        MI +M  N ++E    ++  ++ + GL  +   FN ++   L   + +  ++ Y  M + G  PD+ +F++L+  LE   E   + +V++D +EY     
Subjt:  MIMIMGKNKMIEMAEEVFRKLRKD-GLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKILIKNLEKFRE-EFAVVVKKDCNEYLDYPQ

Query:  KFLNND
        +F+  D
Subjt:  KFLNND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCTACTCTATTGGGTCGTCTTCAACTCCATTTTCCTCAATTGGGTCTTCGCCAAAACCTCACGAACCGAAGCCTCCATTGTTGTACGGCAGCTCCACCTCCAAA
TATCACTTGTGGCCTCAGAAAGGGCTTGAAGAAGCCCTTAGGGAGGTCAAGGGTGCCCTCCAATGAGGCAATTCAAGCAGTTCAATCTCTCAAGCTTGCTAAATCCACCT
CCAAAATGGAAGATGTTATCAATACCAAGCTCAGCAGATTGCTGAAAGCAGACTTGTTTGATGCTCTGACTGAATTACAGAGGCAAAATGAACTGGAATTATCGCTTCAG
GTCTTCAAATTTATGCAAAATGAAGAATGGTACGAGCCAGATTTAAGGTTATACCATGGAATGATTATGATTATGGGAAAGAACAAAATGATTGAAATGGCCGAAGAGGT
CTTTCGTAAGTTAAGAAAGGATGGGTTAGAACCAGACACAAGAGCTTTCAATGAAATGATTGGAGCATACTTGCAAGTGGACATGATCGAAAGAGCGGTTGAGACATACG
GATTGATGATAGCGTCAGGTTGCACTCCAGATAAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTCAGGGAAGAATTTGCTGTAGTGGTGAAGAAAGACTGT
AATGAGTACTTGGATTATCCTCAGAAGTTTCTTAACAATGATGGACAGAAACGGACGACGAAAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATCTACTCTATTGGGTCGTCTTCAACTCCATTTTCCTCAATTGGGTCTTCGCCAAAACCTCACGAACCGAAGCCTCCATTGTTGTACGGCAGCTCCACCTCCAAA
TATCACTTGTGGCCTCAGAAAGGGCTTGAAGAAGCCCTTAGGGAGGTCAAGGGTGCCCTCCAATGAGGCAATTCAAGCAGTTCAATCTCTCAAGCTTGCTAAATCCACCT
CCAAAATGGAAGATGTTATCAATACCAAGCTCAGCAGATTGCTGAAAGCAGACTTGTTTGATGCTCTGACTGAATTACAGAGGCAAAATGAACTGGAATTATCGCTTCAG
GTCTTCAAATTTATGCAAAATGAAGAATGGTACGAGCCAGATTTAAGGTTATACCATGGAATGATTATGATTATGGGAAAGAACAAAATGATTGAAATGGCCGAAGAGGT
CTTTCGTAAGTTAAGAAAGGATGGGTTAGAACCAGACACAAGAGCTTTCAATGAAATGATTGGAGCATACTTGCAAGTGGACATGATCGAAAGAGCGGTTGAGACATACG
GATTGATGATAGCGTCAGGTTGCACTCCAGATAAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTCAGGGAAGAATTTGCTGTAGTGGTGAAGAAAGACTGT
AATGAGTACTTGGATTATCCTCAGAAGTTTCTTAACAATGATGGACAGAAACGGACGACGAAAGGTTGA
Protein sequenceShow/hide protein sequence
MKSTLLGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNITCGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQ
VFKFMQNEEWYEPDLRLYHGMIMIMGKNKMIEMAEEVFRKLRKDGLEPDTRAFNEMIGAYLQVDMIERAVETYGLMIASGCTPDKLTFKILIKNLEKFREEFAVVVKKDC
NEYLDYPQKFLNNDGQKRTTKG