CuGenDBv2

Gene ID	PI0018400
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	PMD domain-containing protein
Genome location	chr11:23667219..23667767
RNA-Seq Expression	PI0018400
Synteny	PI0018400
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0046555.1 hypothetical protein E6C27_scaffold114G00780 [Cucumis melo var. makuwa]

2.2e-64

77.47

Show/hide

Query:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRP+I TVLSGI KI AD LT LEEYLNSYLKRVD+FNDVQSSYS QLLSTDKTRQL+EKTSAIKEA  L+ +L+ D KVIQER  +LSL
Subjt:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL
        E+KELE RL+SI+ ESEQLSILSCEK EAID++ LE+A+LQDE N LESTPAIT+EA +ALATV +SMEAAREE +NFKW+L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL

KAA0060431.1 hypothetical protein E6C27_scaffold22G002540 [Cucumis melo var. makuwa]

2.6e-65

78.02

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Query:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRP+I TVLSGI KI  + LTPLEEYLNSYLKRVD+FNDVQSSYS QLLSTDK RQLDEKTSAI+EA  LM++L+EDA VIQERA QLSL
Subjt:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL
        EKKELE RLQS++ ESEQLSILSCEK EAI ++ LE+A+LQDE N LE TPAIT+E  +ALA VR+SMEAAREE +NFKWKL
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL

KAA0060611.1 hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa]

1.3e-64

77.47

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Query:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRP+I TVLSGI KI AD LT LEEYLNSYLKRVD+FNDVQSS+STQLLS DK RQL+EKTSAIKEA  L+ QL+ DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL
        E+KELE RL+SI+ ESEQLSILSCEK EAID++ LE+A+L+DE N LESTPAIT+EA +ALATVR+SMEAAREE +NFKW+L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL

KAA0065375.1 hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa]

2.0e-65

78.02

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Query:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRP+I TVLSGI KI AD LT LEEYLNSYLKRVD+FNDVQSSYS QLLSTDK RQL+EKTSAIKE   L+ QL+ DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL
        E+KELE RL+SI+ ESEQLSILSCEK EAID++ LE+A+LQDE N LESTPAIT+EA +ALATVR+SMEAAREE +NFKW+L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL

TYK02261.1 hypothetical protein E5676_scaffold18G00620 [Cucumis melo var. makuwa]

1.3e-64

77.47

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Query:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRP+I TVLSGI KI AD LT LEEYLNSYLKRVD+FNDVQSS+STQLLS DK RQL+EKTSAIKEA  L+ QL+ DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL
        E+KELE RL+SI+ ESEQLSILSCEK EAID++ LE+A+L+DE N LESTPAIT+EA +ALATVR+SMEAAREE +NFKW+L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TYW3 Uncharacterized protein

1.1e-64

77.47

Show/hide

Query:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRP+I TVLSGI KI AD LT LEEYLNSYLKRVD+FNDVQSSYS QLLSTDKTRQL+EKTSAIKEA  L+ +L+ D KVIQER  +LSL
Subjt:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL
        E+KELE RL+SI+ ESEQLSILSCEK EAID++ LE+A+LQDE N LESTPAIT+EA +ALATV +SMEAAREE +NFKW+L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL

A0A5A7V3X5 PMD domain-containing protein

1.3e-65

78.02

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Query:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRP+I TVLSGI KI  + LTPLEEYLNSYLKRVD+FNDVQSSYS QLLSTDK RQLDEKTSAI+EA  LM++L+EDA VIQERA QLSL
Subjt:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL
        EKKELE RLQS++ ESEQLSILSCEK EAI ++ LE+A+LQDE N LE TPAIT+E  +ALA VR+SMEAAREE +NFKWKL
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL

A0A5A7V4F4 PMD domain-containing protein

6.3e-65

77.47

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Query:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRP+I TVLSGI KI AD LT LEEYLNSYLKRVD+FNDVQSS+STQLLS DK RQL+EKTSAIKEA  L+ QL+ DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL
        E+KELE RL+SI+ ESEQLSILSCEK EAID++ LE+A+L+DE N LESTPAIT+EA +ALATVR+SMEAAREE +NFKW+L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL

A0A5A7VHW8 PMD domain-containing protein

9.7e-66

78.02

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Query:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRP+I TVLSGI KI AD LT LEEYLNSYLKRVD+FNDVQSSYS QLLSTDK RQL+EKTSAIKE   L+ QL+ DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL
        E+KELE RL+SI+ ESEQLSILSCEK EAID++ LE+A+LQDE N LESTPAIT+EA +ALATVR+SMEAAREE +NFKW+L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL

A0A5D3BRA8 PMD domain-containing protein

6.3e-65

77.47

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Query:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL
        MRTPFEYIPRLRP+I TVLSGI KI AD LT LEEYLNSYLKRVD+FNDVQSS+STQLLS DK RQL+EKTSAIKEA  L+ QL+ DAKVIQER  +LSL
Subjt:  MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSL

Query:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL
        E+KELE RL+SI+ ESEQLSILSCEK EAID++ LE+A+L+DE N LESTPAIT+EA +ALATVR+SMEAAREE +NFKW+L
Subjt:  EKKELESRLQSIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCGCACTCCTTTTGAATATATCCCAAGGCTTAGGCCGAAAATAACAACGGTTCTTTCAGGAATTGCAAAGATTCAAGCAGACAACTTGACTCCTCTTGAAGAATATTT
GAATAGCTACCTTAAGAGGGTAGACAGCTTTAATGATGTACAATCTTCATATTCCACACAACTGCTGTCGACGGATAAAACTCGTCAATTGGACGAGAAGACATCTGCCA
TCAAAGAAGCCTCGGCTTTGATGGACCAACTACAGGAAGATGCCAAAGTTATTCAGGAGAGGGCTACGCAATTATCCTTGGAAAAGAAAGAACTAGAGAGTAGACTTCAG
AGTATACATACTGAGTCTGAACAACTATCCATCTTATCTTGTGAGAAAAATGAGGCCATAGATAAGAAAGTATTGGAGATTGCTCAGCTCCAGGATGAAGCCAATGCCCT
TGAAAGCACCCCTGCTATTACCAAAGAAGCCACTAAGGCCTTGGCTACGGTTCGTAAGAGTATGGAGGCTGCACGCGAAGAACTTAGGAACTTCAAGTGGAAGCTTTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MRTPFEYIPRLRPKITTVLSGIAKIQADNLTPLEEYLNSYLKRVDSFNDVQSSYSTQLLSTDKTRQLDEKTSAIKEASALMDQLQEDAKVIQERATQLSLEKKELESRLQ
SIHTESEQLSILSCEKNEAIDKKVLEIAQLQDEANALESTPAITKEATKALATVRKSMEAAREELRNFKWKL

PI0018400 (gene) of Melon (PI 482460) v1 genome