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PI0018411 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018411
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr12:15465431..15466050
RNA-Seq ExpressionPI0018411
SyntenyPI0018411
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0031967 - organelle envelope (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055708.1 protochlorophyllide-dependent translocon component 52 [Cucumis melo var. makuwa]8.2e-4766.67Show/hide
Query:  MEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPRR----------KTDPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLL
        +EG +T A FY  +D PTV  +IP LL+KFEDVF+W + LPP+R           T+ +NVR YCYA+QQ+EEME+LV EMLASGII PSTSPYSS V+L
Subjt:  MEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPRR----------KTDPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLL

Query:  VKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF
        V+KKDGSW FCVDY+ALNN+TIP KF IP+IEELFDELNGANMF
Subjt:  VKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF

KAA0062164.1 peroxidase 64 [Cucumis melo var. makuwa]1.3e-4461.04Show/hide
Query:  HEVQMWRLQSMEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPRRK----------TDPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPS
        HE     ++ +  E+  AE Y ++++PTVSESI  LL KFEDVFDW  ELPP+R           T+ +NVRPY Y YQQ+ EMEKLV EML SG+I PS
Subjt:  HEVQMWRLQSMEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPRRK----------TDPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPS

Query:  TSPYSSPVLLVKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF
          PYSS VLLVKKK+GSWRFCVDY+ LNNV+I +KF IP+IEELFDELNGA+MF
Subjt:  TSPYSSPVLLVKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF

KAA0065442.1 peroxidase 64 [Cucumis melo var. makuwa]1.9e-5167.68Show/hide
Query:  SNRGGLEELNHEVQMWRLQSMEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPR----------RKTDPINVRPYCYAYQQKEEMEKLVVE
        S++GG + ++  V    L    G MTFAE Y +D+IPTV+ESIPTLL KFE+ FDW EEL PR          +  DPINVRPY YAYQQKEEMEKLV E
Subjt:  SNRGGLEELNHEVQMWRLQSMEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPR----------RKTDPINVRPYCYAYQQKEEMEKLVVE

Query:  MLASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF
        MLA G+IR STSPYSS VLLVKKKDGSWRF VDY+ALNNVTIP+KF IPII+ELFDELNGA MF
Subjt:  MLASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF

TYK09954.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.1e-4665.97Show/hide
Query:  MEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPRR----------KTDPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLL
        +EG +T A FY  +D PTV  +IP LL+KFEDVF+W + LPP+R           T+ +NVR YCYA+QQ+EEME+LV EMLASGII PSTSPYSS V+L
Subjt:  MEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPRR----------KTDPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLL

Query:  VKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF
        V+KKDGSW FCVDY+ALNN+ IP KF IP+IEELFDELNGANMF
Subjt:  VKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF

XP_031745972.1 uncharacterized protein LOC116406393 [Cucumis sativus]2.6e-4558.18Show/hide
Query:  LNHEVQMWR---------LQSMEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPRRK----------TDPINVRPYCYAYQQKEEMEKLVV
        L + ++ WR          ++ME      E  GI+++  V E++  +LKKFEDVF W E LPPRR           TDP+NVRPY Y YQQK EME+LV 
Subjt:  LNHEVQMWR---------LQSMEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPRRK----------TDPINVRPYCYAYQQKEEMEKLVV

Query:  EMLASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF
        EML+SG+IRPS SPYSSPVLLV+KKDGSWRFCVDY+ LN+VTIP+KF IP+IEELFDELNGA  F
Subjt:  EMLASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF

TrEMBL top hitse value%identityAlignment
A0A5A7UKW4 Protochlorophyllide-dependent translocon component 524.0e-4766.67Show/hide
Query:  MEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPRR----------KTDPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLL
        +EG +T A FY  +D PTV  +IP LL+KFEDVF+W + LPP+R           T+ +NVR YCYA+QQ+EEME+LV EMLASGII PSTSPYSS V+L
Subjt:  MEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPRR----------KTDPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLL

Query:  VKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF
        V+KKDGSW FCVDY+ALNN+TIP KF IP+IEELFDELNGANMF
Subjt:  VKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF

A0A5A7V4D5 Peroxidase 646.3e-4561.04Show/hide
Query:  HEVQMWRLQSMEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPRRK----------TDPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPS
        HE     ++ +  E+  AE Y ++++PTVSESI  LL KFEDVFDW  ELPP+R           T+ +NVRPY Y YQQ+ EMEKLV EML SG+I PS
Subjt:  HEVQMWRLQSMEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPRRK----------TDPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPS

Query:  TSPYSSPVLLVKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF
          PYSS VLLVKKK+GSWRFCVDY+ LNNV+I +KF IP+IEELFDELNGA+MF
Subjt:  TSPYSSPVLLVKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF

A0A5A7VAW7 Peroxidase 649.1e-5267.68Show/hide
Query:  SNRGGLEELNHEVQMWRLQSMEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPR----------RKTDPINVRPYCYAYQQKEEMEKLVVE
        S++GG + ++  V    L    G MTFAE Y +D+IPTV+ESIPTLL KFE+ FDW EEL PR          +  DPINVRPY YAYQQKEEMEKLV E
Subjt:  SNRGGLEELNHEVQMWRLQSMEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPR----------RKTDPINVRPYCYAYQQKEEMEKLVVE

Query:  MLASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF
        MLA G+IR STSPYSS VLLVKKKDGSWRF VDY+ALNNVTIP+KF IPII+ELFDELNGA MF
Subjt:  MLASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF

A0A5D3C0K3 Peroxidase 648.3e-4561.04Show/hide
Query:  HEVQMWRLQSMEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPRRK----------TDPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPS
        HE     ++ +  E+  AE Y ++++PTVSESI  LL KFEDVFDW  ELPP+R           T+ +NVRPY Y YQQ+ EMEKLV EML SG+I PS
Subjt:  HEVQMWRLQSMEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPRRK----------TDPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPS

Query:  TSPYSSPVLLVKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF
          PYSS VLLVKKK+GSWRFCVDY+ LNNV+I +KF IP+IEELFDELNGA+MF
Subjt:  TSPYSSPVLLVKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF

A0A5D3CFG5 Ty3/gypsy retrotransposon protein1.5e-4665.97Show/hide
Query:  MEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPRR----------KTDPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLL
        +EG +T A FY  +D PTV  +IP LL+KFEDVF+W + LPP+R           T+ +NVR YCYA+QQ+EEME+LV EMLASGII PSTSPYSS V+L
Subjt:  MEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPRR----------KTDPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLL

Query:  VKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF
        V+KKDGSW FCVDY+ALNN+ IP KF IP+IEELFDELNGANMF
Subjt:  VKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.7e-1038.37Show/hide
Query:  YCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLLV-KKKDGS----WRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF
        Y Y    ++E+E  + +ML  GIIR S SPY+SP+ +V KK+D S    +R  +DY+ LN +T+ ++  IP ++E+  +L   N F
Subjt:  YCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLLV-KKKDGS----WRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF

P10394 Retrovirus-related Pol polyprotein from transposon 4125.8e-1132.98Show/hide
Query:  DPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLLVKKKDG------SWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF
        +P+  + Y   + Q EE++  V +++   I+ PS S Y+SP+LLV KK         WR  +DY+ +N   + +KF +P I+++ D+L  A  F
Subjt:  DPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLLVKKKDG------SWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein2.5e-1442.86Show/hide
Query:  VRPYCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF
        ++PY    + ++E+ K+V ++L +  I PS SP SSPV+LV KKDG++R CVDY+ LN  TI + F +P I+ L   +  A +F
Subjt:  VRPYCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.8e-1340.86Show/hide
Query:  DPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLLVKKK-----DGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF
        DPI  + Y Y    + E+E+ + E+L  GIIRPS SPY+SP+ +V KK     +  +R  VD++ LN VTIP+ + IP I      L  A  F
Subjt:  DPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLLVKKK-----DGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF

Q99315 Transposon Ty3-G Gag-Pol polyprotein2.5e-1442.86Show/hide
Query:  VRPYCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF
        ++PY    + ++E+ K+V ++L +  I PS SP SSPV+LV KKDG++R CVDY+ LN  TI + F +P I+ L   +  A +F
Subjt:  VRPYCYAYQQKEEMEKLVVEMLASGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein3.4e-0656.41Show/hide
Query:  QKEEMEKLVVEMLASGIIRPSTSPYSSPVLLVKKKDGSW
        ++  ++  + EML + II+PS SPYSSPVLLV+KKDG W
Subjt:  QKEEMEKLVVEMLASGIIRPSTSPYSSPVLLVKKKDGSW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTACATTCATTGGGAGTAACAGAGGTGGATTGGAAGAGCTTAACCATGAAGTTCAAATGTGGAGATTACAGTCTATGGAGGGGGAAATGACCTTTGCAGAATTCTA
CGGAATTGATGATATTCCAACAGTGTCTGAATCAATTCCGACATTGTTGAAGAAATTTGAAGATGTGTTTGATTGGTCAGAGGAGCTTCCACCAAGAAGGAAGACCGATC
CTATCAATGTACGTCCATATTGTTATGCATACCAGCAAAAGGAAGAAATGGAGAAGCTTGTGGTTGAGATGTTGGCATCTGGGATCATTCGTCCGAGCACAAGTCCATAT
TCAAGTCCTGTTCTATTGGTGAAAAAGAAAGATGGGAGTTGGAGATTTTGCGTAGATTACCAGGCATTGAATAATGTGACTATTCCGGAGAAGTTTTCCATTCCGATTAT
TGAAGAATTGTTTGATGAGTTGAATGGAGCTAACATGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTACATTCATTGGGAGTAACAGAGGTGGATTGGAAGAGCTTAACCATGAAGTTCAAATGTGGAGATTACAGTCTATGGAGGGGGAAATGACCTTTGCAGAATTCTA
CGGAATTGATGATATTCCAACAGTGTCTGAATCAATTCCGACATTGTTGAAGAAATTTGAAGATGTGTTTGATTGGTCAGAGGAGCTTCCACCAAGAAGGAAGACCGATC
CTATCAATGTACGTCCATATTGTTATGCATACCAGCAAAAGGAAGAAATGGAGAAGCTTGTGGTTGAGATGTTGGCATCTGGGATCATTCGTCCGAGCACAAGTCCATAT
TCAAGTCCTGTTCTATTGGTGAAAAAGAAAGATGGGAGTTGGAGATTTTGCGTAGATTACCAGGCATTGAATAATGTGACTATTCCGGAGAAGTTTTCCATTCCGATTAT
TGAAGAATTGTTTGATGAGTTGAATGGAGCTAACATGTTTTGA
Protein sequenceShow/hide protein sequence
MVTFIGSNRGGLEELNHEVQMWRLQSMEGEMTFAEFYGIDDIPTVSESIPTLLKKFEDVFDWSEELPPRRKTDPINVRPYCYAYQQKEEMEKLVVEMLASGIIRPSTSPY
SSPVLLVKKKDGSWRFCVDYQALNNVTIPEKFSIPIIEELFDELNGANMF