; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0018450 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018450
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPSII 6.1 kDa protein
Genome locationchr01:23233590..23237877
RNA-Seq ExpressionPI0018450
SyntenyPI0018450
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059706.1 photosystem II reaction center W protein [Cucumis melo var. makuwa]5.9e-6296.38Show/hide
Query:  MAAVTSAAAATIRTSLVQNRP-LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA +RTSLVQNRP LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS NL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAATIRTSLVQNRP-LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_004146953.1 photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sativus]5.4e-6397.08Show/hide
Query:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAAT+RTSLVQNR LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_008451280.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo]7.0e-6397.1Show/hide
Query:  MAAVTSAAAATIRTSLVQNRP-LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA +RTSLVQNRP LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAATIRTSLVQNRP-LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_031745255.1 photosystem II reaction center W protein, chloroplastic isoform X1 [Cucumis sativus]8.6e-6191.72Show/hide
Query:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLL--------GLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTE
        MAAVTSAAAAT+RTSLVQNR LPSASPAPFLL        GLPALGKKGGVRCSMEGKGNGEVENKS NLGMGASLIAAACAATMSSPAMALVDERLSTE
Subjt:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLL--------GLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTE

Query:  GTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        GTGLPFGLSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  GTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_038900227.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]4.1e-6396.35Show/hide
Query:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAA AT RTSLVQNRPLP+ASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0K4V6 PSII 6.1 kDa protein2.6e-6397.08Show/hide
Query:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAAT+RTSLVQNR LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A1S3BQI5 PSII 6.1 kDa protein3.4e-6397.1Show/hide
Query:  MAAVTSAAAATIRTSLVQNRP-LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA +RTSLVQNRP LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAATIRTSLVQNRP-LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A5D3DRC0 PSII 6.1 kDa protein2.9e-6296.38Show/hide
Query:  MAAVTSAAAATIRTSLVQNRP-LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA +RTSLVQNRP LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKS NL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAATIRTSLVQNRP-LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A6J1GQI7 PSII 6.1 kDa protein7.8e-6090.51Show/hide
Query:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAAT+R+SLVQNRPLP+ASP+PFLLGLPALGKKGGVRCSMEGK NG+VENKS  LGMGASL+AAA AA+MSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWILLGVFG IWAFYI+YTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A6J1H5C6 PSII 6.1 kDa protein3.0e-5989.05Show/hide
Query:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
        MAAV SA+AA +R+SLVQNRPLP+ASP  FLLGLPALGK+GGVRC ++GK NGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWILLGVFG IW FYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic6.6e-3262.14Show/hide
Query:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLLGLPALG-KKGGVRCSMEGK-GNGEVENKSCNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLP
        MA+ T A+A+T+  +       P+ + +  +LGLP +G KKGGVRCSME K GN  V      +G G S  A AA  A MS+PAMALVDER+STEGTGLP
Subjt:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLLGLPALG-KKGGVRCSMEGK-GNGEVENKSCNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        FGLSNNLLGWIL GVFGLIW F+ VYTS+LEEDEESGLSL
Subjt:  FGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic9.9e-3662.86Show/hide
Query:  MAAVTSAAAATI--RTSLVQN-RPLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLP
        MA +T++++A++  R SLV N R   S+SP   +LGLP++ K+  V CS+E K +      + N  MGASL+AAA AAT+S+PAMALVDER+STEGTGLP
Subjt:  MAAVTSAAAATI--RTSLVQN-RPLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        FGLSNNLLGWIL GVFGLIWA Y VY S LEEDEESGLSL
Subjt:  FGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic3.6e-2251.47Show/hide
Query:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLLGLPALGKKGG--VRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF
        MA V++AAA ++    V   P          LGLP +  +    VRC+   +        +   G GASL+A A  A   +PAMALVDER+STEGTGL  
Subjt:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLLGLPALGKKGG--VRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESG
        GLSNNLLGWILLGVFGLIW+ Y +YTS LEEDEESG
Subjt:  GLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic3.2e-1043.84Show/hide
Query:  SLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLE--EDEESGLSL
        ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+LLGVFG +WA + +    L   ED + GL L
Subjt:  SLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W4.7e-3362.14Show/hide
Query:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLLGLPALG-KKGGVRCSMEGK-GNGEVENKSCNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLP
        MA+ T A+A+T+  +       P+ + +  +LGLP +G KKGGVRCSME K GN  V      +G G S  A AA  A MS+PAMALVDER+STEGTGLP
Subjt:  MAAVTSAAAATIRTSLVQNRPLPSASPAPFLLGLPALG-KKGGVRCSMEGK-GNGEVENKSCNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        FGLSNNLLGWIL GVFGLIW F+ VYTS+LEEDEESGLSL
Subjt:  FGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCACCTCCGCCGCCGCTGCCACCATCCGCACTTCTCTGGTGCAGAACCGCCCTCTGCCGTCGGCTTCACCTGCCCCATTCCTTCTTGGGTTGCCTGCCTT
GGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGTAGAAAACAAATCATGCAACTTGGGAATGGGGGCGTCGTTGATAGCTGCAGCATGTG
CTGCAACGATGTCGAGCCCGGCCATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTG
GGAGTTTTTGGTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAATCTGGCTTATCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
GCCTTTGCTTTCTCCCCACTAAAAAAAAACATCTAAATTTTGCCCTAATCCCAAGAGATAAAATAAGGGGGAGAGATTTTGTTGAAATTACGGTAAAAAGAGAAATCTTG
CTGGCAAAATTTGGCCTGGCCATCTTTGATTCACCCAGTTAATTGGGAGCCTTTTAACGTAAAGACATTCTTCAGAGCAAAGAAACATAGAAAAGTTGGAAGCATCTTTG
TAAGATATGAAAGAAAGATGAGAGTGAAGTATTAGGAAAATCTCAAATTGGGACATTTGGGAAGTCCAGGTAGGAGTAAACTATTGGCTAAAAAAGGATGATAGGACACG
TGTAGAAAGGTAATTGGTGGAAAGTAGATAAAGGATATGAAGGAAATGGTATGGTTGGCCCTCTCTCTATCTCGTCTTTGTGTGGTGGCACTCAAAACCCAACAAATAAT
ATTAATTCTTTACAAACCCTCCCTTTGATCTCCACTCTCCAAATTCCCAATCCCTTCTTTTTTCTTTTTCCCTTCGTAATTTGAAGACCAAATAAATCTAATGGCCGCCG
TCACCTCCGCCGCCGCTGCCACCATCCGCACTTCTCTGGTGCAGAACCGCCCTCTGCCGTCGGCTTCACCTGCCCCATTCCTTCTTGGGTTGCCTGCCTTGGGAAAGAAA
GGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGTAGAAAACAAATCATGCAACTTGGGAATGGGGGCGTCGTTGATAGCTGCAGCATGTGCTGCAACGAT
GTCGAGCCCGGCCATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACTGGCCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTG
GTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAATCTGGCTTATCTCTTTAAGCCAACATTTGCTCATCTTACTTACTATTATTAATT
ATTGCTACTTTTGTTATTGTTGTGGATATTTTGCCTTTGGCTTGAATTGTGTAGAAGCTTTTGAATTCATATCATCCAAGCCTTTTGTCGGGTATCAATGTAGAAAGAAG
TAAATGTGGTTCAACTACTATGTTTCATTTCTCTGTTTTTTTTTTTATTCCTATTGTTAAAGTAATTTAGATTTTGTTTGATAACCGTTTGAGTTTATTAAATCTAAGTT
TATAAAACTCTTTTTTCGTTTCT
Protein sequenceShow/hide protein sequence
MAAVTSAAAATIRTSLVQNRPLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILL
GVFGLIWAFYIVYTSTLEEDEESGLSL