CuGenDBv2

Gene ID	PI0018476
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr09:7803003..7803206
RNA-Seq Expression	PI0018476
Synteny	PI0018476
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]

2.9e-22

77.61

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Query:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ
        +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF EWELRNQ
Subjt:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ

KAA0038929.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]

2.9e-22

77.61

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Query:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ
        +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF EWELRNQ
Subjt:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

2.9e-22

77.61

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Query:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ
        +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF EWELRNQ
Subjt:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]

2.9e-22

77.61

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Query:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ
        +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF EWELRNQ
Subjt:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ

KAA0065286.1 retrotransposon protein [Cucumis melo var. makuwa]

3.8e-22

77.61

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Query:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ
        +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF EWELRNQ
Subjt:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TCB9 Putative nuclease HARBI1

1.4e-22

77.61

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Query:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ
        +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF EWELRNQ
Subjt:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ

A0A5A7TXW1 Retrotransposon protein

1.4e-22

77.61

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Query:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ
        +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF EWELRNQ
Subjt:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ

A0A5A7U476 Retrotransposon protein

1.4e-22

77.61

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Query:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ
        +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF EWELRNQ
Subjt:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ

A0A5D3BDX0 Retrotransposon protein

1.4e-22

77.61

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Query:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ
        +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF EWELRNQ
Subjt:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ

A0A5D3D9Z3 Retrotransposon protein

1.9e-22

77.61

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Query:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ
        +ACCLLHNLINREMTN +I ++ DE D T+ATTA DDIHYIETSNEWSQW+D LA+EMF EWELRNQ
Subjt:  MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCCTGTTGTCTATTGCACAACCTCATCAACAGGGAGATGACTAACACTGAAATACCAGAGGATTACGACGAGGGTGATTTAACATACGCCACGACTGCCAATGACGA
CATTCATTATATTGAGACCTCAAACGAATGGAGTCAATGGAAGGATGGTCTAGCCAAAGAAATGTTCAATGAATGGGAGTTGCGTAATCAGTAA

mRNA sequence

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Protein sequence

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MACCLLHNLINREMTNTEIPEDYDEGDLTYATTANDDIHYIETSNEWSQWKDGLAKEMFNEWELRNQ

PI0018476 (gene) of Melon (PI 482460) v1 genome