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PI0018485 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018485
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionE3 ubiquitin-protein ligase arkadia-A, putative
Genome locationchr04:1002991..1003747
RNA-Seq ExpressionPI0018485
SyntenyPI0018485
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052530.1 putative E3 ubiquitin-protein ligase arkadia-A [Cucumis melo var. makuwa]1.5e-5996.15Show/hide
Query:  MNLTTTTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFW
        MNL TTTMED HKLQNIPSFKLSRYSSSARDSD GDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNES FVGFW
Subjt:  MNLTTTTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFW

Query:  ERLRIKLAALRSRWCDYFHRIFGFFSFALD
        ERLRIKLAALRSRWCD FHRIFGFFSFALD
Subjt:  ERLRIKLAALRSRWCDYFHRIFGFFSFALD

KAG7034735.1 hypothetical protein SDJN02_04465, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-5289.17Show/hide
Query:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL
        M+DPHKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVGFWERLRIKL
Subjt:  MEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKL

Query:  AALRSRWCDYFHRIFGFFSF
        AALRSRWCD F R FGFF F
Subjt:  AALRSRWCDYFHRIFGFFSF

XP_022925985.1 uncharacterized protein LOC111433238 [Cucurbita moschata]2.5e-5487.6Show/hide
Query:  MNLT--TTTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVG
        MNLT  TT M+DPHKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVG
Subjt:  MNLT--TTTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVG

Query:  FWERLRIKLAALRSRWCDYFHRIFGFFSF
        FWERLRIKLAALRSRWCD F R FGFF F
Subjt:  FWERLRIKLAALRSRWCDYFHRIFGFFSF

XP_022977989.1 uncharacterized protein LOC111478115 [Cucurbita maxima]8.7e-5587.69Show/hide
Query:  MNLT--TTTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVG
        MNLT  T TM+DPHKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVG
Subjt:  MNLT--TTTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVG

Query:  FWERLRIKLAALRSRWCDYFHRIFGFFSFA
        FWERLRIKLAALRSRWCD F R FGFF FA
Subjt:  FWERLRIKLAALRSRWCDYFHRIFGFFSFA

XP_023544918.1 uncharacterized protein LOC111804374 [Cucurbita pepo subsp. pepo]8.7e-5587.69Show/hide
Query:  MNLT--TTTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVG
        MNLT  TT M+DPHKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVG
Subjt:  MNLT--TTTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVG

Query:  FWERLRIKLAALRSRWCDYFHRIFGFFSFA
        FWERLRIKLAALRSRWCD F R FGFF FA
Subjt:  FWERLRIKLAALRSRWCDYFHRIFGFFSFA

TrEMBL top hitse value%identityAlignment
A0A0A0KKP9 Uncharacterized protein3.3e-6095.42Show/hide
Query:  MNLT-TTTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGF
        MNLT TTTMEDPH+LQNIPSFKLSRYSSSARDSD  DDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNES FVGF
Subjt:  MNLT-TTTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGF

Query:  WERLRIKLAALRSRWCDYFHRIFGFFSFALD
        WERLRIKLAALRSRWCD FHRIFGFFSFALD
Subjt:  WERLRIKLAALRSRWCDYFHRIFGFFSFALD

A0A5A7UBK0 Putative E3 ubiquitin-protein ligase arkadia-A7.4e-6096.15Show/hide
Query:  MNLTTTTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFW
        MNL TTTMED HKLQNIPSFKLSRYSSSARDSD GDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNES FVGFW
Subjt:  MNLTTTTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFW

Query:  ERLRIKLAALRSRWCDYFHRIFGFFSFALD
        ERLRIKLAALRSRWCD FHRIFGFFSFALD
Subjt:  ERLRIKLAALRSRWCDYFHRIFGFFSFALD

A0A6J1CYB8 uncharacterized protein LOC1110157128.8e-4590.65Show/hide
Query:  TMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIK
        T+ + HKLQNIPSFKLSRYSS ARDSD GDDLRY SLKDILLNSPSYSGVNDFN+FNSSNISIRNELVKRAASAYLQSAAILVSRNESCFV FWERLR K
Subjt:  TMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIK

Query:  LAALRSR
        LAALRSR
Subjt:  LAALRSR

A0A6J1EJR7 uncharacterized protein LOC1114332381.2e-5487.6Show/hide
Query:  MNLT--TTTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVG
        MNLT  TT M+DPHKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVG
Subjt:  MNLT--TTTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVG

Query:  FWERLRIKLAALRSRWCDYFHRIFGFFSF
        FWERLRIKLAALRSRWCD F R FGFF F
Subjt:  FWERLRIKLAALRSRWCDYFHRIFGFFSF

A0A6J1ISV4 uncharacterized protein LOC1114781154.2e-5587.69Show/hide
Query:  MNLT--TTTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVG
        MNLT  T TM+DPHKLQN+PSFKLSRYSS+ RDSD GDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNESCFVG
Subjt:  MNLT--TTTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVG

Query:  FWERLRIKLAALRSRWCDYFHRIFGFFSFA
        FWERLRIKLAALRSRWCD F R FGFF FA
Subjt:  FWERLRIKLAALRSRWCDYFHRIFGFFSFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G18395.1 unknown protein3.2e-0740.24Show/hide
Query:  DSDPGDDLRYTSLKDILLNS---------PSYSGVND----FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGF
        D +  ++L+YTSLKD++ +S         P YS  +      +E +SSNI+I NELVKRAAS Y+QS+ I+++ + + F  F
Subjt:  DSDPGDDLRYTSLKDILLNS---------PSYSGVND----FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGF

AT5G06280.1 unknown protein3.9e-0533.93Show/hide
Query:  TTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFV
        TT+  P    +I S   S +        P   + YTSL+DI+       LN PS +G  +      + +ISIRN LVK+AA +YLQ   +L S ++S   
Subjt:  TTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFV

Query:  GFWERLRIKLAA
         F+ R+ + L+A
Subjt:  GFWERLRIKLAA

AT5G06280.3 unknown protein3.9e-0533.93Show/hide
Query:  TTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFV
        TT+  P    +I S   S +        P   + YTSL+DI+       LN PS +G  +      + +ISIRN LVK+AA +YLQ   +L S ++S   
Subjt:  TTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFV

Query:  GFWERLRIKLAA
         F+ R+ + L+A
Subjt:  GFWERLRIKLAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTAACAACAACAACAATGGAAGACCCTCATAAGCTTCAGAACATACCTTCTTTCAAATTGTCCCGTTATTCCTCCAGCGCCCGAGACTCCGACCCCGGCGATGA
CCTCCGATACACTAGCTTGAAAGACATTCTTCTGAATTCGCCGTCGTACAGCGGCGTAAATGATTTTAACGAATTCAATTCATCAAATATTTCGATCCGAAACGAGCTGG
TGAAAAGAGCCGCGTCGGCCTACCTTCAATCAGCGGCGATCTTGGTCAGCCGAAATGAAAGCTGTTTCGTCGGATTCTGGGAGAGGCTTAGGATCAAACTCGCCGCCCTC
CGTTCCCGTTGGTGTGATTATTTTCACCGTATTTTTGGCTTCTTTAGTTTTGCCTTAGACTAA
mRNA sequenceShow/hide mRNA sequence
CCTCCCACAAAATTCTCTGCTTTTGGCCGCATCTTAATGAATACCATAAACTCTCAAATCCATCCATAGCCTCAATTGGCCGATTCAATCTCCTAATTCCATGGAATCTT
CAACAAAACCAACCCCTTTTTCTCTCTAAACCATTAACAAATTCCACAATCTCTAACCAGTGAAGAACAAAAGAACAAAGGAAAACAAAAATTGGGTCCAAAACCCTAAA
ATCACCTTTAATGGCTATAATCCACAGGGAAAATCTCCGTTTATGAATTTAACAACAACAACAATGGAAGACCCTCATAAGCTTCAGAACATACCTTCTTTCAAATTGTC
CCGTTATTCCTCCAGCGCCCGAGACTCCGACCCCGGCGATGACCTCCGATACACTAGCTTGAAAGACATTCTTCTGAATTCGCCGTCGTACAGCGGCGTAAATGATTTTA
ACGAATTCAATTCATCAAATATTTCGATCCGAAACGAGCTGGTGAAAAGAGCCGCGTCGGCCTACCTTCAATCAGCGGCGATCTTGGTCAGCCGAAATGAAAGCTGTTTC
GTCGGATTCTGGGAGAGGCTTAGGATCAAACTCGCCGCCCTCCGTTCCCGTTGGTGTGATTATTTTCACCGTATTTTTGGCTTCTTTAGTTTTGCCTTAGACTAAGAACG
TTATTAGACCTTCCTTTACTTTTAATTTATTTCTTTTAATTTGTTTTCGAAATTGGTTTTCTTATTTTTATACTTTTCCTCGGAAAGTAGAAAAAAT
Protein sequenceShow/hide protein sequence
MNLTTTTMEDPHKLQNIPSFKLSRYSSSARDSDPGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESCFVGFWERLRIKLAAL
RSRWCDYFHRIFGFFSFALD