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PI0018547 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018547
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description30S ribosomal protein S6 alpha, chloroplastic
Genome locationchr09:1345093..1348681
RNA-Seq ExpressionPI0018547
SyntenyPI0018547
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000529 - Ribosomal protein S6
IPR014717 - Translation elongation factor EF1B/ribosomal protein S6
IPR035980 - Ribosomal protein S6 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7017023.1 30S ribosomal protein S6 alpha, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]3.1e-3285.71Show/hide
Query:  QATTQLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
        Q   +LLVAGG MYVEVFN+GL+PLAYSIKKKNKAGETNTY+DGINLLFTYFTKPESM VLEA LQADDDV+RSMSFKVR RKY
Subjt:  QATTQLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
XP_016898885.1 PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Cucumis melo]1.2e-3497.5Show/hide
Query:  QLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
        +LLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRK+
Subjt:  QLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
XP_022928898.1 30S ribosomal protein S6 alpha, chloroplastic-like [Cucurbita moschata]3.1e-3285.71Show/hide
Query:  QATTQLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
        Q   +LLVAGG MYVEVFN+GL+PLAYSIKKKNKAGETNTY+DGINLLFTYFTKPESM VLEA LQADDDV+RSMSFKVR RKY
Subjt:  QATTQLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
XP_022996136.1 30S ribosomal protein S6 alpha, chloroplastic-like [Cucurbita maxima]1.4e-3286.9Show/hide
Query:  QATTQLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
        Q   +LLVAGG MYVEVF+KG++PLAYSIKKKNKAGETNTYLDGI+LLFTYFTKPESM +LEATLQADDDVVRSMSFKVRKRKY
Subjt:  QATTQLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
XP_038906485.1 30S ribosomal protein S6 alpha, chloroplastic [Benincasa hispida]2.2e-3393.75Show/hide
Query:  QLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
        +LLVAGGAMYVEVF+KGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESM +LEATLQADD+VVRSMSFKVRKRKY
Subjt:  QLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
TrEMBL top hitse value%identityAlignment
A0A0A0KK24 Uncharacterized protein5.6e-3597.5Show/hide
Query:  QLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
        +LLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRK+
Subjt:  QLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
A0A1S4DT54 30S ribosomal protein S6 alpha, chloroplastic5.6e-3597.5Show/hide
Query:  QLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
        +LLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRK+
Subjt:  QLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
A0A5D3C6V7 30S ribosomal protein S6 alpha5.6e-3597.5Show/hide
Query:  QLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
        +LLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRK+
Subjt:  QLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
A0A6J1HZP1 30S ribosomal protein S6 alpha, chloroplastic-like1.5e-3285.71Show/hide
Query:  QATTQLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
        Q   +LLVAGG MYVEVFN+GL+PLAYSIKKKNKAGETNTY+DGINLLFTYFTKPESM VLEA LQADDDV+RSMSFKVR RKY
Subjt:  QATTQLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
A0A6J1K3V4 30S ribosomal protein S6 alpha, chloroplastic-like6.8e-3386.9Show/hide
Query:  QATTQLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
        Q   +LLVAGG MYVEVF+KG++PLAYSIKKKNKAGETNTYLDGI+LLFTYFTKPESM +LEATLQADDDVVRSMSFKVRKRKY
Subjt:  QATTQLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
SwissProt top hitse value%identityAlignment
P82403 30S ribosomal protein S6 alpha, chloroplastic2.8e-3178.57Show/hide
Query:  QATTQLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
        Q   +LLVAGGAMYVEVFN+G+IPLAYSIK+KNKAGETN YLDGI LLFTYFTKPES++ LEA L  DDDV+RS SFK+RKRKY
Subjt:  QATTQLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
Q8VY91 30S ribosomal protein S6 alpha, chloroplastic6.2e-3176.19Show/hide
Query:  QATTQLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
        Q   +LLVAGG MYVEVFN+G+IPLAYSI+KKNKAGETNTYLDGI LLFTYFTKPES+  LE  L ADDD++RS SFK++KRKY
Subjt:  QATTQLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
Arabidopsis top hitse value%identityAlignment
AT1G64510.1 Translation elongation factor EF1B/ribosomal protein S6 family protein4.4e-3276.19Show/hide
Query:  QATTQLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY
        Q   +LLVAGG MYVEVFN+G+IPLAYSI+KKNKAGETNTYLDGI LLFTYFTKPES+  LE  L ADDD++RS SFK++KRKY
Subjt:  QATTQLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCGCCTACAGGCTACAACACAGTTGCTTGTTGCTGGGGGTGCAATGTATGTTGAAGTATTCAACAAAGGCCTCATTCCACTAGCATATAGCATCAAGAAGAAAAA
CAAAGCTGGTGAAACCAACACTTACTTGGATGGCATCAATCTCCTCTTCACCTACTTCACAAAACCCGAATCAATGGCAGTTCTTGAGGCAACGCTCCAAGCAGACGACG
ATGTTGTTCGATCAATGAGTTTCAAGGTAAGGAAACGAAAATACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGCGCCTACAGGCTACAACACAGTTGCTTGTTGCTGGGGGTGCAATGTATGTTGAAGTATTCAACAAAGGCCTCATTCCACTAGCATATAGCATCAAGAAGAAAAA
CAAAGCTGGTGAAACCAACACTTACTTGGATGGCATCAATCTCCTCTTCACCTACTTCACAAAACCCGAATCAATGGCAGTTCTTGAGGCAACGCTCCAAGCAGACGACG
ATGTTGTTCGATCAATGAGTTTCAAGGTAAGGAAACGAAAATACTAA
Protein sequenceShow/hide protein sequence
MQRLQATTQLLVAGGAMYVEVFNKGLIPLAYSIKKKNKAGETNTYLDGINLLFTYFTKPESMAVLEATLQADDDVVRSMSFKVRKRKY