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PI0018568 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018568
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 412 family
Genome locationchr01:14661903..14662256
RNA-Seq ExpressionPI0018568
SyntenyPI0018568
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047868.1 Integrase, catalytic core [Cucumis melo var. makuwa]3.4e-2372.97Show/hide
Query:  IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIY
        I KPLSNLL  NQPY+FD+KCNQ +QTLKD LTSAPIL TPDWSQ FELMCD SD  VGAML + K+ VI+ IY
Subjt:  IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIY

KAA0054796.1 Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var. makuwa]1.3e-2264.84Show/hide
Query:  MDPAKIDVI--------AKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYY
        +D  KIDV+         KPL + L   QPY+FD K NQAFQTLKD L  API   PDWSQPFELMCDASD AVGAM G+KK+KVIHPIYY
Subjt:  MDPAKIDVI--------AKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYY

TYJ99659.1 Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var. makuwa]3.4e-2374.67Show/hide
Query:  IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYY
        IAKPL  LL A+Q Y+FD K NQAFQTLKD L  API   P+WSQPFELMCDASD AVGAM G+KK+KVIHPIYY
Subjt:  IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYY

TYK02154.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]4.4e-2372.97Show/hide
Query:  IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIY
        I KPLS LL  NQPY+FD+KCNQ +QTLKD LTSAPIL TPDWSQ FELMCD SD  VGAML + K+KVI+ IY
Subjt:  IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIY

XP_020965932.1 LOW QUALITY PROTEIN: uncharacterized protein LOC110266184 [Arachis ipaensis]1.4e-2166.67Show/hide
Query:  IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYY
        IAKPLSNLL  + P+ FDD+C QAF+TLK  LT+API+T P W  PFELMCDASD A+GA+LG++KDK  H IYY
Subjt:  IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYY

TrEMBL top hitse value%identityAlignment
A0A5A7TY39 Integrase, catalytic core1.6e-2372.97Show/hide
Query:  IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIY
        I KPLSNLL  NQPY+FD+KCNQ +QTLKD LTSAPIL TPDWSQ FELMCD SD  VGAML + K+ VI+ IY
Subjt:  IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIY

A0A5A7UKH8 Retrovirus-related Pol polyprotein from transposon 412 family6.2e-2364.84Show/hide
Query:  MDPAKIDVI--------AKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYY
        +D  KIDV+         KPL + L   QPY+FD K NQAFQTLKD L  API   PDWSQPFELMCDASD AVGAM G+KK+KVIHPIYY
Subjt:  MDPAKIDVI--------AKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYY

A0A5D3BL15 Retrovirus-related Pol polyprotein from transposon 412 family1.6e-2374.67Show/hide
Query:  IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYY
        IAKPL  LL A+Q Y+FD K NQAFQTLKD L  API   P+WSQPFELMCDASD AVGAM G+KK+KVIHPIYY
Subjt:  IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYY

A0A5D3BSM7 Retrovirus-related Pol polyprotein from transposon 17.62.1e-2372.97Show/hide
Query:  IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIY
        I KPLS LL  NQPY+FD+KCNQ +QTLKD LTSAPIL TPDWSQ FELMCD SD  VGAML + K+KVI+ IY
Subjt:  IAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIY

A0A5D3DSQ6 RT_RNaseH_2 domain-containing protein1.2e-2161.11Show/hide
Query:  MDPAKIDVIAKPL-------SNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYY
        MD  KIDVI + +          +     Y FD+KC+QAFQTLKDMLT   IL TPDW QPFELMCD SD  VGA+LG+KKDKVIHPIYY
Subjt:  MDPAKIDVIAKPL-------SNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYY

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein3.9e-0637.04Show/hide
Query:  KIDVIAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYYPL
        K   +  PL+NLL  +  + +     QA + +K  L S P+L   D+S+   L  DASD AVGA+L +K D      YYP+
Subjt:  KIDVIAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYYPL

P0CT35 Transposon Tf2-2 polyprotein3.9e-0637.04Show/hide
Query:  KIDVIAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYYPL
        K   +  PL+NLL  +  + +     QA + +K  L S P+L   D+S+   L  DASD AVGA+L +K D      YYP+
Subjt:  KIDVIAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYYPL

P0CT36 Transposon Tf2-3 polyprotein3.9e-0637.04Show/hide
Query:  KIDVIAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYYPL
        K   +  PL+NLL  +  + +     QA + +K  L S P+L   D+S+   L  DASD AVGA+L +K D      YYP+
Subjt:  KIDVIAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYYPL

P0CT41 Transposon Tf2-12 polyprotein3.9e-0637.04Show/hide
Query:  KIDVIAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYYPL
        K   +  PL+NLL  +  + +     QA + +K  L S P+L   D+S+   L  DASD AVGA+L +K D      YYP+
Subjt:  KIDVIAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYYPL

Q9UR07 Transposon Tf2-11 polyprotein3.9e-0637.04Show/hide
Query:  KIDVIAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYYPL
        K   +  PL+NLL  +  + +     QA + +K  L S P+L   D+S+   L  DASD AVGA+L +K D      YYP+
Subjt:  KIDVIAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYYPL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCCCGCAAAGATTGATGTGATTGCAAAGCCGCTTAGCAATCTATTATATGCCAATCAACCTTATCATTTCGATGATAAATGTAACCAGGCGTTCCAGACTTTGAA
AGACATGTTGACCTCAGCGCCTATCCTCACCACTCCTGACTGGTCACAACCATTTGAACTCATGTGTGACGCGAGTGATGCAGCGGTAGGGGCTATGCTGGGTAAAAAGA
AAGATAAAGTGATCCACCCGATATACTACCCACTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGACCCCGCAAAGATTGATGTGATTGCAAAGCCGCTTAGCAATCTATTATATGCCAATCAACCTTATCATTTCGATGATAAATGTAACCAGGCGTTCCAGACTTTGAA
AGACATGTTGACCTCAGCGCCTATCCTCACCACTCCTGACTGGTCACAACCATTTGAACTCATGTGTGACGCGAGTGATGCAGCGGTAGGGGCTATGCTGGGTAAAAAGA
AAGATAAAGTGATCCACCCGATATACTACCCACTATAG
Protein sequenceShow/hide protein sequence
MDPAKIDVIAKPLSNLLYANQPYHFDDKCNQAFQTLKDMLTSAPILTTPDWSQPFELMCDASDAAVGAMLGKKKDKVIHPIYYPL