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PI0018571 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018571
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:5098001..5098471
RNA-Seq ExpressionPI0018571
SyntenyPI0018571
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]3.8e-5770.51Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+  QA   S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT A
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE
        ISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP + E+KV S  + L  +N+ KEE
Subjt:  ISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.9e-5769.87Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  QA   S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT  
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE
        ISK++GKGKL AQPDHANVS ISLRS KIL+TP + E+KV S P+ L  +N+ KEE
Subjt:  ISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-5770.51Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  QA S S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT A
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE
        ISK++GKGKLPAQ DHANVSAISLRSGKIL+TP + E+KV S P+ L  +N+ KEE
Subjt:  ISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-5770.97Show/hide
Query:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI
        KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NLRWGND Q+  QA S S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT AI
Subjt:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI

Query:  SKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE
        SK++GKGKLPAQPDHANVSAISLRSGKIL+TP + E+K+ S P+ L  +N+ KEE
Subjt:  SKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]2.9e-5769.87Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  QA   S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT  
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE
        ISK++GKGKL AQPDHANVS ISLRS KIL+TP + E+KV S P+ L  +N+ KEE
Subjt:  ISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919101.4e-5769.87Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  QA   S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT  
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE
        ISK++GKGKL AQPDHANVS ISLRS KIL+TP + E+KV S P+ L  +N+ KEE
Subjt:  ISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE

A0A5A7VQ60 Retrotransposon gag protein1.1e-5770.51Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  QA S S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT A
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE
        ISK++GKGKLPAQ DHANVSAISLRSGKIL+TP + E+KV S P+ L  +N+ KEE
Subjt:  ISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE

A0A5D3CB46 Retrotransposon gag protein1.1e-5770.97Show/hide
Query:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI
        KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NLRWGND Q+  QA S S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT AI
Subjt:  KVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI

Query:  SKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE
        SK++GKGKLPAQPDHANVSAISLRSGKIL+TP + E+K+ S P+ L  +N+ KEE
Subjt:  SKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE

A0A5D3DCG3 Retrotransposon gag protein1.4e-5769.87Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  QA   S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT  
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE
        ISK++GKGKL AQPDHANVS ISLRS KIL+TP + E+KV S P+ L  +N+ KEE
Subjt:  ISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE

E5GBZ4 Retrotransposon gag protein1.9e-5770.51Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+  QA   S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT A
Subjt:  MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE
        ISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP + E+KV S  + L  +N+ KEE
Subjt:  ISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPILLVDENKKKEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAA
CACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACACCCAACGACCCGCACAAGCAACTTCACCCTCAAATAATCAAGGTAGTAATTTGGAAG
ATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTT
CCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGTGAAGAAAAGGTACCATCTATCCCTATCCTTCTAGT
AGATGAAAATAAGAAAAAGGAAGAAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAA
CACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACACCCAACGACCCGCACAAGCAACTTCACCCTCAAATAATCAAGGTAGTAATTTGGAAG
ATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTT
CCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCCAAGTGAAGAAAAGGTACCATCTATCCCTATCCTTCTAGT
AGATGAAAATAAGAAAAAGGAAGAAAATTAG
Protein sequenceShow/hide protein sequence
MKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKL
PAQPDHANVSAISLRSGKILETPPSEEKVPSIPILLVDENKKKEEN