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PI0018595 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018595
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description30S ribosomal protein S17, chloroplastic
Genome locationchr10:6162897..6169057
RNA-Seq ExpressionPI0018595
SyntenyPI0018595
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041013.1 30S ribosomal protein S17-like [Cucumis melo var. makuwa]2.4e-4797.09Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD VKLDPSRPLSK KHWVVAEILRKARIY+PPSQDNQTVSDKSNVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP

Query:  STT
        STT
Subjt:  STT

KAE8649314.1 hypothetical protein Csa_015070 [Cucumis sativus]4.0e-4796.12Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD VKLDPSRPLSKHKHWVVAEILRKARIY+PPSQD Q+VSDKSNVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP

Query:  STT
        STT
Subjt:  STT

TYK20371.1 30S ribosomal protein S17-like [Cucumis melo var. makuwa]2.4e-4797.09Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD VKLDPSRPLSK KHWVVAEILRKARIY+PPSQDNQTVSDKSNVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP

Query:  STT
        STT
Subjt:  STT

XP_004137152.1 uncharacterized protein LOC101211400 [Cucumis sativus]4.0e-4796.12Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD VKLDPSRPLSKHKHWVVAEILRKARIY+PPSQD Q+VSDKSNVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP

Query:  STT
        STT
Subjt:  STT

XP_016903240.1 PREDICTED: 30S ribosomal protein S17-like [Cucumis melo]2.4e-4797.09Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD VKLDPSRPLSK KHWVVAEILRKARIY+PPSQDNQTVSDKSNVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP

Query:  STT
        STT
Subjt:  STT

TrEMBL top hitse value%identityAlignment
A0A1S4E5I9 30S ribosomal protein S17, chloroplastic1.1e-4797.09Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD VKLDPSRPLSK KHWVVAEILRKARIY+PPSQDNQTVSDKSNVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP

Query:  STT
        STT
Subjt:  STT

A0A5A7TD01 30S ribosomal protein S17, chloroplastic1.1e-4797.09Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD VKLDPSRPLSK KHWVVAEILRKARIY+PPSQDNQTVSDKSNVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP

Query:  STT
        STT
Subjt:  STT

A0A5D3D9X1 30S ribosomal protein S17, chloroplastic1.1e-4797.09Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD VKLDPSRPLSK KHWVVAEILRKARIY+PPSQDNQTVSDKSNVSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP

Query:  STT
        STT
Subjt:  STT

A0A6J1FRT9 30S ribosomal protein S17, chloroplastic1.8e-4593.2Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD VKLDPSRPLSKHK WVVAEILRKARIY+PPSQ+NQ VSDK  VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP

Query:  STT
        STT
Subjt:  STT

A0A6J1JP01 30S ribosomal protein S17, chloroplastic1.8e-4593.2Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD VKLDPSRPLSKHK WVVAEILRKARIY+PPSQ+NQ VSDK  VSAP
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP

Query:  STT
        STT
Subjt:  STT

SwissProt top hitse value%identityAlignment
A7HM43 30S ribosomal protein S177.5e-2054.22Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPP
        K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SRPLSK K WVV  IL ++++ + P
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPP

B1I1J7 30S ribosomal protein S171.5e-2064Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARI
        G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGD VK+  +RPLS+HK W VAE+L +++I
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARI

Q1LTC9 30S ribosomal protein S171.1e-1854.79Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKA
        G VVSNKM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN CNIGD +++   RP+SK K W++  I+ KA
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKA

Q6LVA7 30S ribosomal protein S172.2e-1953.95Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARI
        +G V+S+KM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN+CN+GDTV++   RPLSK K W +  I+ KAR+
Subjt:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARI

Q8R7W3 30S ribosomal protein S174.8e-1958.11Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKA
        +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLSK K W + E+++KA
Subjt:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKA

Arabidopsis top hitse value%identityAlignment
AT1G49400.1 Nucleic acid-binding, OB-fold-like protein8.4e-3570.87Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP
        MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGD VKLDPSRPLSK+KHW+VAEI++KARIY P +     VS  ++ S+ 
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAP

Query:  STT
        STT
Subjt:  STT

AT1G79850.1 ribosomal protein S172.5e-1042.31Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKA
        MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ SRP+SK K +V   ++ +A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKA

AT3G18880.1 Nucleic acid-binding, OB-fold-like protein5.5e-3479.52Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKP
        MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGD VKLDPSRPLSKHKHW+V+EI++KARIY P
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAAGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCAGTTGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAACGCAC
TTCCAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACACGGTTAAATTAGATCCTTCTAGGCCATTGAGCAAGCATAAACATTGGGTGGTTGCTGAAA
TTTTGAGGAAAGCACGAATTTACAAGCCACCATCACAAGATAACCAGACTGTTTCAGACAAAAGCAATGTTTCAGCTCCTTCAACCACTTAA
mRNA sequenceShow/hide mRNA sequence
CACCACCCAAACAAATATCATTAGACTACCCTAAAATTTAGCTAAAGCCTAGCAACAAAAAAAAACTAAATATAACCAAATTTATTTTTAACGATTTTTTTTTTTTCACG
AAAGTTCTTCTCTTTGTGCTTAAACCCTATTTCACGTTAAGCCACCCCCGCCCTCCCATTACATGGTACTCCGCCCCGCCGCACGCCGTTCCTATCCAGATAGTTTCTGA
ATCTTGAATTTGTAGCAGCTTCAAGCTTAAAAGGGTTTAGTGTTTTCAATCGTTGGGCCAAGATGAAGCAAGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCA
GTTGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAACGCACTTCCAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGA
CACGGTTAAATTAGATCCTTCTAGGCCATTGAGCAAGCATAAACATTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACAAGCCACCATCACAAGATAACCAGA
CTGTTTCAGACAAAAGCAATGTTTCAGCTCCTTCAACCACTTAAGGTTCACGAGCAGTTCTTGCTAATGCAATGATTAACATGGTGCGCATCATCCTAAGAAGATTTAGT
AATAAAACTAAAATGAAGCATTTTGGTAGTCTTGAGACTAATATACTTATGAAAGTGGTTTGTTGTGCTACATTGACACATATAATGTCTTTGTAGGCAACTAAGATGCC
CTTCCCATGGCATTTGAATCCCTTTGTTTGAAATTTGATGATTATGTTGTCTTATTTTTGCTGTATGTTAATGACTTGGTGTTCGTAGTGAACCATGAAACACATCTTGC
CTTTTGAAAACGCAGTTCAGAAATTTTTGCTAGATAAGAGCCTAGTATTTTCTTTGCTTTATTTTTCCTTTTAGGAGTTTATTTCATTTTCCTTTAAATGTTTCTTCTAT
CTTTTCGTTTTGAGGAGTTTGCATCTTACGCAAAAAAGAGACATAATAATAG
Protein sequenceShow/hide protein sequence
MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDTVKLDPSRPLSKHKHWVVAEILRKARIYKPPSQDNQTVSDKSNVSAPSTT