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PI0018659 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018659
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr06:19409128..19409585
RNA-Seq ExpressionPI0018659
SyntenyPI0018659
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-4772.37Show/hide
Query:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERSN---------------------RMAELE
        MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKENP +DEH S SERSN                     RMAELE
Subjt:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERSN---------------------RMAELE

Query:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ
        KKVNML+KVVEERD+EIA LKNHIESRDAAESSHT+T KN +KGKAI+QESQ
Subjt:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ

KAA0037432.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.3e-4671.71Show/hide
Query:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERS---------------------NRMAELE
        MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKEN  +DEH SSS+ S                     NRMAELE
Subjt:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERS---------------------NRMAELE

Query:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ
        KKVNML+KVVEERDYEIA LKNHIESRDAAESSH +T KN DKGKA++QESQ
Subjt:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.8e-4772.37Show/hide
Query:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERSN---------------------RMAELE
        MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKENP MDEH S SERSN                     RMAELE
Subjt:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERSN---------------------RMAELE

Query:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ
        KKVNML+K VEERD+EIA LKNHIESRDAAESSHT+T KN +KGKAI+QESQ
Subjt:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ

KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-4671.05Show/hide
Query:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERSN---------------------RMAELE
        MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPFEV K+IWE++SKPPKGGI+IKENP +DEH S SERSN                     RMAELE
Subjt:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERSN---------------------RMAELE

Query:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ
        KKVNML+K VEE+D+EIA LKNHIESRDAAESSHT+T KN +KGKAI+QESQ
Subjt:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ

KAA0059562.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-4671.71Show/hide
Query:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERS---------------------NRMAELE
        MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKEN  +DEH S SE S                     NRMAELE
Subjt:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERS---------------------NRMAELE

Query:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ
        KKVNML+KVVEERDYEIA LKNHIESRDAAESSH +T KN DKGKA++QESQ
Subjt:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ

TrEMBL top hitse value%identityAlignment
A0A5A7SKR0 Ty3-gypsy retrotransposon protein8.6e-4872.37Show/hide
Query:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERSN---------------------RMAELE
        MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKENP +DEH S SERSN                     RMAELE
Subjt:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERSN---------------------RMAELE

Query:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ
        KKVNML+KVVEERD+EIA LKNHIESRDAAESSHT+T KN +KGKAI+QESQ
Subjt:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ

A0A5A7TZU9 Ribonuclease H8.6e-4872.37Show/hide
Query:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERSN---------------------RMAELE
        MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKENP MDEH S SERSN                     RMAELE
Subjt:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERSN---------------------RMAELE

Query:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ
        KKVNML+K VEERD+EIA LKNHIESRDAAESSHT+T KN +KGKAI+QESQ
Subjt:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ

A0A5A7U5H1 Ty3-gypsy retrotransposon protein7.2e-4771.05Show/hide
Query:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERSN---------------------RMAELE
        MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPFEV K+IWE++SKPPKGGI+IKENP +DEH S SERSN                     RMAELE
Subjt:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERSN---------------------RMAELE

Query:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ
        KKVNML+K VEE+D+EIA LKNHIESRDAAESSHT+T KN +KGKAI+QESQ
Subjt:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ

A0A5A7UUI7 Ty3-gypsy retrotransposon protein1.2e-4671.71Show/hide
Query:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERS---------------------NRMAELE
        MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKEN  +DEH S SE S                     NRMAELE
Subjt:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERS---------------------NRMAELE

Query:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ
        KKVNML+KVVEERDYEIA LKNHIESRDAAESSH +T KN DKGKA++QESQ
Subjt:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ

A0A5D3CSH0 Ty3-gypsy retrotransposon protein1.6e-4671.71Show/hide
Query:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERS---------------------NRMAELE
        MTS+GNTSKALS+I KRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKEN  +DEH SSS+ S                     NRMAELE
Subjt:  MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERS---------------------NRMAELE

Query:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ
        KKVNML+KVVEERDYEIA LKNHIESRDAAESSH +T KN DKGKA++QESQ
Subjt:  KKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTYTTKNKDKGKAILQESQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCCAGAGGCAACACTTCCAAAGCTCTAAGCAACATCAGAAAAAGGCCAAATACTCGCAGCCGCTCAAGGGAGGCCCAATCGTCTGAGGATATGCCACCCTTTGA
GGTCGCAAAGAGTATCTGGGAAGAGTTGTCAAAACCACCAAAAGGAGGAATTATAATAAAGGAAAATCCTGTGATGGATGAGCACGGTTCGTCTTCTGAACGCTCAAATA
GAATGGCGGAGCTTGAAAAGAAGGTCAACATGCTCCTGAAGGTAGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATTGAAAGTCGTGACGCTGCTGAA
TCAAGTCACACATATACCACCAAGAATAAGGACAAAGGGAAGGCAATTTTGCAGGAAAGTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACATCCAGAGGCAACACTTCCAAAGCTCTAAGCAACATCAGAAAAAGGCCAAATACTCGCAGCCGCTCAAGGGAGGCCCAATCGTCTGAGGATATGCCACCCTTTGA
GGTCGCAAAGAGTATCTGGGAAGAGTTGTCAAAACCACCAAAAGGAGGAATTATAATAAAGGAAAATCCTGTGATGGATGAGCACGGTTCGTCTTCTGAACGCTCAAATA
GAATGGCGGAGCTTGAAAAGAAGGTCAACATGCTCCTGAAGGTAGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAAAAATCACATTGAAAGTCGTGACGCTGCTGAA
TCAAGTCACACATATACCACCAAGAATAAGGACAAAGGGAAGGCAATTTTGCAGGAAAGTCAATGA
Protein sequenceShow/hide protein sequence
MTSRGNTSKALSNIRKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVMDEHGSSSERSNRMAELEKKVNMLLKVVEERDYEIASLKNHIESRDAAE
SSHTYTTKNKDKGKAILQESQ