CuGenDBv2

Gene ID	PI0018696
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome location	chr04:30015663..30016748
RNA-Seq Expression	PI0018696
Synteny	PI0018696
Gene Ontology terms	GO:0048507 - meristem development (biological process)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0036767.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]

2.8e-79

54.52

Show/hide

Query:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF
        MFDL+QP QI+WEPYK V+DSL +FCTNGH+IW+T+S     +IGEWHH DR LR+FGI+Q VP DCNTEPLLHNIDLRTADWSDRVAHLVMRW NRRRF
Subjt:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF

Query:  IATGPSF-------------------GLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEV
         ATGP                      LYIT+PGAA+ HLRSNN RLR+VADDPQQVL+ICN+NE YMENIHYMYDV IVPAPVQRRR  VQEPD+LEEV
Subjt:  IATGPSF-------------------GLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEV

Query:  EQ----------------------------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPE
        +Q                                                                            H R RG+HNEYLYYE PAAVPE
Subjt:  EQ----------------------------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPE

Query:  QPDE-QQQEN
        Q DE QQQEN
Subjt:  QPDE-QQQEN

KAA0051233.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]

4.0e-73

53.95

Show/hide

Query:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF
        MFDL+QP QI+WEPYK  +DSL +FCTNGHDIWQT+S     +IGEWHH DR LR+FGI+Q VP DCNTEP LHNIDLRTADWSD+VAHLVMRW NRRRF
Subjt:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF

Query:  IATGPSFGLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEVEQ-----------------
         ATGP        P       RSNN RLR+VADDPQQVL+ICN+NE YMENIHYMYDV IVPAPVQRRR  VQEPD+LEEV+Q                 
Subjt:  IATGPSFGLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEVEQ-----------------

Query:  -------------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPEQPDEQQQE
                                                                     H R RGEHNEYLYYE PAAVP+Q DEQQQ+
Subjt:  -------------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPEQPDEQQQE

KAA0055624.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]

7.8e-77

56.36

Show/hide

Query:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF
        MFDL+QP QI+WEPYK V+DSL +FCTNGH+IW+T+S     +IGEWHH DR LR+FGI+Q VP DCNTEPLLHNIDLRTADWSDRVAHLVMRW NRR  
Subjt:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF

Query:  IATGPSFGLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEVEQ-----------------
                LYIT+PGAA+ HLRSNN RL +VADDPQQVL+ICNNNE YMENIHYMYDV IVPAPVQRRR  VQEPD+LEEV+Q                 
Subjt:  IATGPSFGLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEVEQ-----------------

Query:  -----------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPEQPDE-QQQEN
                                                                   H R RGEHNEYLYYE PAAVPEQ DE QQQEN
Subjt:  -----------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPEQPDE-QQQEN

KAA0067080.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]

1.1e-78

54.19

Show/hide

Query:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF
        MFDL+QP QI+WEPYK V+DSL +FCTNGH+IW+T+S     +IGEWHH DR LR+FGI+Q VP DCNTEPLLHNIDLRTADWSDRVAHLVMRW NRRRF
Subjt:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF

Query:  IATGPSF-------------------GLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEV
         ATGP                      LYIT+PGA + HLRSNN RLR+VADDPQQVL+ICN+NE YMENIHYMYDV IVPAPVQRRR  VQEPD+LEEV
Subjt:  IATGPSF-------------------GLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEV

Query:  EQ----------------------------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPE
        +Q                                                                            H R RGEHNEYLYYE PAAVPE
Subjt:  EQ----------------------------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPE

Query:  QPDE-QQQEN
        Q +E QQQEN
Subjt:  QPDE-QQQEN

TYJ95836.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]

2.8e-79

54.52

Show/hide

Query:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF
        MFDL+QP QI+WEPYK V+DSL +FCTNGH+IW+T+S     +IGEWHH DR LR+FGI+Q VP DCNTEPLLHNIDLRTADWSDRVAHLVMRW NRRRF
Subjt:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF

Query:  IATGPSF-------------------GLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEV
         ATGP                      LYIT+PGAA+ HLRSNN RLR+VADDPQQVL+ICN+NE YMENIHYMYDV IVPAPVQRRR  VQEPD+LEEV
Subjt:  IATGPSF-------------------GLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEV

Query:  EQ----------------------------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPE
        +Q                                                                            H R RG+HNEYLYYE PAAVPE
Subjt:  EQ----------------------------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPE

Query:  QPDE-QQQEN
        Q DE QQQEN
Subjt:  QPDE-QQQEN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T598 Serine/threonine-protein phosphatase 7 long form-like protein

1.4e-79

54.52

Show/hide

Query:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF
        MFDL+QP QI+WEPYK V+DSL +FCTNGH+IW+T+S     +IGEWHH DR LR+FGI+Q VP DCNTEPLLHNIDLRTADWSDRVAHLVMRW NRRRF
Subjt:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF

Query:  IATGPSF-------------------GLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEV
         ATGP                      LYIT+PGAA+ HLRSNN RLR+VADDPQQVL+ICN+NE YMENIHYMYDV IVPAPVQRRR  VQEPD+LEEV
Subjt:  IATGPSF-------------------GLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEV

Query:  EQ----------------------------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPE
        +Q                                                                            H R RG+HNEYLYYE PAAVPE
Subjt:  EQ----------------------------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPE

Query:  QPDE-QQQEN
        Q DE QQQEN
Subjt:  QPDE-QQQEN

A0A5A7U5S8 Mediator of RNA polymerase II transcription subunit 12-like isoform X1

1.9e-73

53.95

Show/hide

Query:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF
        MFDL+QP QI+WEPYK  +DSL +FCTNGHDIWQT+S     +IGEWHH DR LR+FGI+Q VP DCNTEP LHNIDLRTADWSD+VAHLVMRW NRRRF
Subjt:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF

Query:  IATGPSFGLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEVEQ-----------------
         ATGP        P       RSNN RLR+VADDPQQVL+ICN+NE YMENIHYMYDV IVPAPVQRRR  VQEPD+LEEV+Q                 
Subjt:  IATGPSFGLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEVEQ-----------------

Query:  -------------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPEQPDEQQQE
                                                                     H R RGEHNEYLYYE PAAVP+Q DEQQQ+
Subjt:  -------------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPEQPDEQQQE

A0A5A7UKC7 Serine/threonine-protein phosphatase 7 long form-like protein

3.8e-77

56.36

Show/hide

Query:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF
        MFDL+QP QI+WEPYK V+DSL +FCTNGH+IW+T+S     +IGEWHH DR LR+FGI+Q VP DCNTEPLLHNIDLRTADWSDRVAHLVMRW NRR  
Subjt:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF

Query:  IATGPSFGLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEVEQ-----------------
                LYIT+PGAA+ HLRSNN RL +VADDPQQVL+ICNNNE YMENIHYMYDV IVPAPVQRRR  VQEPD+LEEV+Q                 
Subjt:  IATGPSFGLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEVEQ-----------------

Query:  -----------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPEQPDE-QQQEN
                                                                   H R RGEHNEYLYYE PAAVPEQ DE QQQEN
Subjt:  -----------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPEQPDE-QQQEN

A0A5A7VIP6 Mediator of RNA polymerase II transcription subunit 12-like isoform X1

5.2e-79

54.19

Show/hide

Query:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF
        MFDL+QP QI+WEPYK V+DSL +FCTNGH+IW+T+S     +IGEWHH DR LR+FGI+Q VP DCNTEPLLHNIDLRTADWSDRVAHLVMRW NRRRF
Subjt:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF

Query:  IATGPSF-------------------GLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEV
         ATGP                      LYIT+PGA + HLRSNN RLR+VADDPQQVL+ICN+NE YMENIHYMYDV IVPAPVQRRR  VQEPD+LEEV
Subjt:  IATGPSF-------------------GLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEV

Query:  EQ----------------------------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPE
        +Q                                                                            H R RGEHNEYLYYE PAAVPE
Subjt:  EQ----------------------------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPE

Query:  QPDE-QQQEN
        Q +E QQQEN
Subjt:  QPDE-QQQEN

A0A5D3BAB0 Serine/threonine-protein phosphatase 7 long form-like protein

1.4e-79

54.52

Show/hide

Query:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF
        MFDL+QP QI+WEPYK V+DSL +FCTNGH+IW+T+S     +IGEWHH DR LR+FGI+Q VP DCNTEPLLHNIDLRTADWSDRVAHLVMRW NRRRF
Subjt:  MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRF

Query:  IATGPSF-------------------GLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEV
         ATGP                      LYIT+PGAA+ HLRSNN RLR+VADDPQQVL+ICN+NE YMENIHYMYDV IVPAPVQRRR  VQEPD+LEEV
Subjt:  IATGPSF-------------------GLYITRPGAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEV

Query:  EQ----------------------------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPE
        +Q                                                                            H R RG+HNEYLYYE PAAVPE
Subjt:  EQ----------------------------------------------------------------------------HVRDRGEHNEYLYYEPPAAVPE

Query:  QPDE-QQQEN
        Q DE QQQEN
Subjt:  QPDE-QQQEN

SwissProt top hits

e value

%identity

Alignment

Q9LNG5 Serine/threonine-protein phosphatase 7 long form homolog

1.7e-13

35.51

Show/hide

Query:  FDLIQPDQIIWEPYKA-VMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLR---TADWSDRVAHLVMRWLNR
        FD  + +Q+IW+PY   ++  +   C +G +IW+TV+      + EWH  DR LR+FG+ Q +P  C+ E  LH ID R     DWS R +  +  W  R
Subjt:  FDLIQPDQIIWEPYKA-VMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLR---TADWSDRVAHLVMRWLNR

Query:  RRFIATG
           + +G
Subjt:  RRFIATG

Arabidopsis top hits

e value

%identity

Alignment

AT1G48120.1 hydrolases;protein serine/threonine phosphatases

1.2e-14

35.51

Show/hide

Query:  FDLIQPDQIIWEPYKA-VMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLR---TADWSDRVAHLVMRWLNR
        FD  + +Q+IW+PY   ++  +   C +G +IW+TV+      + EWH  DR LR+FG+ Q +P  C+ E  LH ID R     DWS R +  +  W  R
Subjt:  FDLIQPDQIIWEPYKA-VMDSLSNFCTNGHDIWQTVSR----HIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLR---TADWSDRVAHLVMRWLNR

Query:  RRFIATG
           + +G
Subjt:  RRFIATG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTTGATCTTATTCAACCTGATCAGATTATCTGGGAGCCGTACAAAGCTGTCATGGATAGTTTGTCGAATTTTTGTACGAATGGTCACGACATATGGCAGACGGTTAG
TCGTCACATCGGTGAGTGGCATCATTCTGACAGAACACTCAGACGGTTTGGTATTAAACAAGATGTTCCAGTTGACTGTAATACTGAACCACTGTTGCACAACATTGACC
TGAGAACGGCTGATTGGTCCGATAGAGTTGCTCATTTGGTGATGCGATGGCTAAATCGCAGAAGATTTATTGCTACGGGACCTTCGTTTGGGCTCTATATCACTCGACCG
GGAGCTGCTGTAGGTCATCTGAGGTCGAACAATAGTAGACTTCGGGATGTCGCAGATGATCCACAACAGGTCCTAGATATATGCAACAATAACGAGTGGTACATGGAGAA
CATACACTATATGTACGATGTAACTATTGTACCTGCACCAGTTCAAAGGAGACGTGCTCGAGTGCAAGAGCCTGATGAATTGGAAGAAGTTGAACAACATGTGCGTGATC
GTGGAGAACATAACGAATATTTGTACTACGAACCGCCTGCAGCGGTACCCGAGCAGCCAGATGAGCAACAACAAGAGAATCAGGAGGACTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MFDLIQPDQIIWEPYKAVMDSLSNFCTNGHDIWQTVSRHIGEWHHSDRTLRRFGIKQDVPVDCNTEPLLHNIDLRTADWSDRVAHLVMRWLNRRRFIATGPSFGLYITRP
GAAVGHLRSNNSRLRDVADDPQQVLDICNNNEWYMENIHYMYDVTIVPAPVQRRRARVQEPDELEEVEQHVRDRGEHNEYLYYEPPAAVPEQPDEQQQENQED

PI0018696 (gene) of Melon (PI 482460) v1 genome