CuGenDBv2

Gene ID	PI0018720
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr08:5100426..5100947
RNA-Seq Expression	PI0018720
Synteny	PI0018720
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR005162 - Retrotransposon gag domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035532.1 uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa]

5.0e-82

87.28

Show/hide

Query:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF
        MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLATMHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFF
Subjt:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF

Query:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA
        PENVEILARQKL ELKHTGSIR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Subjt:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

1.4e-81

86.71

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Query:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF
        MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLATMHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFF
Subjt:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF

Query:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA
        PENVEILAR+KL ELKHTGSIR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Subjt:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA

KAA0053339.1 reverse transcriptase [Cucumis melo var. makuwa]

3.8e-82

87.28

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Query:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF
        MANQAPTGGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLATMHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFF
Subjt:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF

Query:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA
        PENVEILAR+KL ELKHTGSIR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Subjt:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]

1.4e-81

86.71

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Query:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF
        MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLATMHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFF
Subjt:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF

Query:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA
        PENVEILAR+KL ELKHTGSIR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Subjt:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA

TYK18566.1 uncharacterized protein E5676_scaffold119G00720 [Cucumis melo var. makuwa]

1.4e-81

86.71

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Query:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF
        MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLATMHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFF
Subjt:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF

Query:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA
        PENVEILAR+KL ELKHTGSIR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Subjt:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SW95 Retrotrans_gag domain-containing protein

2.4e-82

87.28

Show/hide

Query:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF
        MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLATMHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFF
Subjt:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF

Query:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA
        PENVEILARQKL ELKHTGSIR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Subjt:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA

A0A5A7UIP7 Reverse transcriptase

1.8e-82

87.28

Show/hide

Query:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF
        MANQAPTGGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLATMHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFF
Subjt:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF

Query:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA
        PENVEILAR+KL ELKHTGSIR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Subjt:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA

A0A5D3BRZ6 Reverse transcriptase

7.0e-82

86.71

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Query:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF
        MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLATMHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFF
Subjt:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF

Query:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA
        PENVEILAR+KL ELKHTGSIR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Subjt:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA

A0A5D3C4R1 Reverse transcriptase

7.0e-82

86.71

Show/hide

Query:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF
        MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLATMHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFF
Subjt:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF

Query:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA
        PENVEILAR+KL ELKHTGSIR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Subjt:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA

A0A5D3DQ20 Retrotrans_gag domain-containing protein

7.0e-82

86.71

Show/hide

Query:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF
        MANQAP GGA+ V+RVKIPEPKPFCGARDAKALEN+IFDLEQYFR  NTV EEAKVTLATMHL+EDAKLWWRSR+V+IQEGR TIDTWD+LK+ELRSQFF
Subjt:  MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFF

Query:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA
        PENVEILAR+KL ELKHTGSIR+YVKQF GLMLDIRDMSEKD+VFCF E LKPWAKTKLYEQRVQ+L+SAYAA
Subjt:  PENVEILARQKLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCAAACCAAGCTCCAACTGGAGGAGCTGTACAAGTTAATAGGGTGAAAATCCCCGAACCCAAACCCTTCTGTGGGGCAAGGGACGCAAAAGCCTTGGAGAACTTCAT
ATTTGACCTCGAACAATACTTCCGGGACTTAAACACTGTTGCGGAAGAAGCGAAAGTGACATTAGCAACGATGCACCTAGCTGAGGATGCAAAGTTGTGGTGGAGGTCCC
GGTATGTCGAGATCCAAGAAGGACGATATACGATAGACACCTGGGACAGTTTAAAGAAAGAACTACGCTCACAGTTCTTCCCCGAGAATGTTGAAATCCTTGCTCGACAG
AAGTTACATGAACTAAAACACACCGGTAGCATTCGGGATTATGTGAAGCAGTTTGTGGGACTGATGTTAGATATACGCGATATGTCCGAGAAAGACGAAGTTTTCTGTTT
TTTCGAAGACCTTAAACCATGGGCGAAGACCAAGCTATACGAACAGAGGGTCCAAGAACTCTCATCGGCTTACGCAGCGTAG

mRNA sequence

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Protein sequence

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MANQAPTGGAVQVNRVKIPEPKPFCGARDAKALENFIFDLEQYFRDLNTVAEEAKVTLATMHLAEDAKLWWRSRYVEIQEGRYTIDTWDSLKKELRSQFFPENVEILARQ
KLHELKHTGSIRDYVKQFVGLMLDIRDMSEKDEVFCFFEDLKPWAKTKLYEQRVQELSSAYAA

PI0018720 (gene) of Melon (PI 482460) v1 genome