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PI0018729 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018729
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr11:17837057..17837239
RNA-Seq ExpressionPI0018729
SyntenyPI0018729
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047716.1 retrotransposon protein [Cucumis melo var. makuwa]3.8e-1370Show/hide
Query:  MEFSTMYSQGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAND
        +E  TMYSQGLDMS D+IMGTQP + S+GR  S+GSKRK+G + +ETTKIIRSAMEYAN+
Subjt:  MEFSTMYSQGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAND
KAA0056167.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-0961.67Show/hide
Query:  MEFSTMYSQGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAND
        +E  +MYSQGLDMS D+IMGT+P Q S+GR  SS SKRK  G+T+ET KII +++EY ND
Subjt:  MEFSTMYSQGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAND
KAA0060365.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-0970.59Show/hide
Query:  QGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAN
        QGLDM PD+IMGT+PS+ SE R GSSGSKRK+GG+ +E+ +IIRSAMEY N
Subjt:  QGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAN
KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]3.6e-1161.67Show/hide
Query:  MEFSTMYSQGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAND
        ME   MYSQG+DM  D+IMGT+P + +EGR GSSGSKRK+GG+ +ET +IIR+ ME++ND
Subjt:  MEFSTMYSQGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAND
TYK08370.1 retrotransposon protein [Cucumis melo var. makuwa]3.8e-1370Show/hide
Query:  MEFSTMYSQGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAND
        +E  TMYSQGLDMS D+IMGTQP + S+GR  S+GSKRK+G + +ETTKIIRSAMEYAN+
Subjt:  MEFSTMYSQGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAND
TrEMBL top hitse value%identityAlignment
A0A5A7U0G0 Retrotransposon protein1.8e-1370Show/hide
Query:  MEFSTMYSQGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAND
        +E  TMYSQGLDMS D+IMGTQP + S+GR  S+GSKRK+G + +ETTKIIRSAMEYAN+
Subjt:  MEFSTMYSQGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAND
A0A5A7UNI7 Retrotransposon protein9.4e-1061.67Show/hide
Query:  MEFSTMYSQGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAND
        +E  +MYSQGLDMS D+IMGT+P Q S+GR  SS SKRK  G+T+ET KII +++EY ND
Subjt:  MEFSTMYSQGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAND
A0A5A7V3C0 Retrotransposon protein5.5e-1070.59Show/hide
Query:  QGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAN
        QGLDM PD+IMGT+PS+ SE R GSSGSKRK+GG+ +E+ +IIRSAMEY N
Subjt:  QGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAN
A0A5A7V469 Retrotransposon protein1.7e-1161.67Show/hide
Query:  MEFSTMYSQGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAND
        ME   MYSQG+DM  D+IMGT+P + +EGR GSSGSKRK+GG+ +ET +IIR+ ME++ND
Subjt:  MEFSTMYSQGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAND
A0A5D3CAJ4 Retrotransposon protein1.8e-1370Show/hide
Query:  MEFSTMYSQGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAND
        +E  TMYSQGLDMS D+IMGTQP + S+GR  S+GSKRK+G + +ETTKIIRSAMEYAN+
Subjt:  MEFSTMYSQGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAND
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTTCCACGATGTACAGTCAGGGACTGGACATGTCACCTGACAACATAATGGGCACACAACCCAGTCAGTTGTCTGAGGGTAGGGCTGGTTCGAGCGGTTCGAA
GAGGAAACGGGGAGGGAAGACGTTAGAGACGACAAAAATTATTCGCAGTGCCATGGAATATGCGAATGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTTTCCACGATGTACAGTCAGGGACTGGACATGTCACCTGACAACATAATGGGCACACAACCCAGTCAGTTGTCTGAGGGTAGGGCTGGTTCGAGCGGTTCGAA
GAGGAAACGGGGAGGGAAGACGTTAGAGACGACAAAAATTATTCGCAGTGCCATGGAATATGCGAATGACTAG
Protein sequenceShow/hide protein sequence
MEFSTMYSQGLDMSPDNIMGTQPSQLSEGRAGSSGSKRKRGGKTLETTKIIRSAMEYAND