; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0018812 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018812
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDNA-directed RNA polymerase subunit alpha
Genome locationtig00000638:50071..51071
RNA-Seq ExpressionPI0018812
SyntenyPI0018812
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011260 - RNA polymerase, alpha subunit, C-terminal
IPR011262 - DNA-directed RNA polymerase, insert domain
IPR011263 - DNA-directed RNA polymerase, RpoA/D/Rpb3-type
IPR011773 - DNA-directed RNA polymerase, alpha subunit
IPR036603 - RNA polymerase, RBP11-like subunit
IPR036643 - DNA-directed RNA polymerase, insert domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QHB75996.1 RNA polymerase alpha subunit [Cucumis melo subsp. melo]2.9e-16891.87Show/hide
Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE  ENFHLKNNKQK                +K+K  ++K  FIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

QJF46416.1 RNA polymerase alpha subunit [Cucumis melo]1.2e-16991.57Show/hide
Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH KNNKQK                +K+K  ++K  FIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

YP_004841815.1 RNA polymerase alpha subunit [Cucumis melo subsp. melo]1.2e-16991.57Show/hide
Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH KNNKQK                +K+K  ++K  FIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

YP_009004075.1 RNA polymerase alpha subunit [Cucumis hystrix]4.4e-16991.57Show/hide
Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNK+K                +K+K  ++K  FIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

YP_009346515.1 RNA polymerase alpha subunit [Cucumis x hytivus]1.5e-16991.87Show/hide
Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK                +K+K  ++K  FIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

TrEMBL top hitse value%identityAlignment
A0A249RXS6 DNA-directed RNA polymerase subunit alpha5.6e-17091.57Show/hide
Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH KNNKQK                +K+K  ++K  FIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

A0A249RY86 DNA-directed RNA polymerase subunit alpha5.6e-17091.57Show/hide
Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH KNNKQK                +K+K  ++K  FIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

A0A249RYZ7 DNA-directed RNA polymerase subunit alpha5.6e-17091.57Show/hide
Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH KNNKQK                +K+K  ++K  FIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

A0A249RZB5 DNA-directed RNA polymerase subunit alpha5.6e-17091.57Show/hide
Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH KNNKQK                +K+K  ++K  FIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

A0A286NFR2 DNA-directed RNA polymerase subunit alpha5.6e-17091.57Show/hide
Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH KNNKQK                +K+K  ++K  FIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

SwissProt top hitse value%identityAlignment
Q09WY5 DNA-directed RNA polymerase subunit alpha1.7e-14780.8Show/hide
Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        M +EK+ VSTR L+WKCVESRADSKRLYYGRF+L+PLM+GQADTIGIAMR+ALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPG VTAQDIILPPSVEIVDNTQHIANLTEPI LCIEL+IERNRGY I+TPNNFQ+ SYP+DA+FMPVRN NHSIHSYVNGNENQEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKE-----------NFHLKNNKQKEKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDLLNNSP
        LEIWTNGSLTPKEALHEASRNLIDLFIPF HAEE  E           NFH +  K ++ +K  ++K  +IDQSELPPR+YNCLKR NI+T  +LLNNS 
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKE-----------NFHLKNNKQKEKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDLLNNSP

Query:  DELMKIKHFRIEDVKHILDILEM
        +ELMKI+ FRIEDVKHILD+LE+
Subjt:  DELMKIKHFRIEDVKHILDILEM

Q2PMQ3 DNA-directed RNA polymerase subunit alpha1.1e-14979.94Show/hide
Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTL+WKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMR+ LLGEIEGTCITR KSEKIPHEYSTI+GI+ESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASIC KGPG VTAQDIILPPSVEIVDNTQHIAN+TEP+NLCIELKIERNRGY I+T  NFQD SYP+DA FMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK------------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLF
        LEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE  +NF+L+NN+ K                  +K+K  ++K  FIDQ ELPPRIYNCLKR NIHTL 
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK------------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLF

Query:  DLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        +LLNNS ++L+KI+HFR+EDVK+ILD LE+EK+F
Subjt:  DLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF

Q49KW6 DNA-directed RNA polymerase subunit alpha6.2e-15081.33Show/hide
Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREK+RVSTRTL+WKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTR+ASICVKGPGCVTAQDIILP SVEIVDNTQ+IANLTEPINLCI L+IERNRGYHI+TP NFQD SYP+DA+FMPVRN NHSIHSY NGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNN----------------KQKEKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE  EN HL+NN                K ++ +K  ++K  FIDQ ELPPR YNCLKR NIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNN----------------KQKEKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LN S ++LMK+++FRIEDVK ILD LE+EK F
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

Q4VZK3 DNA-directed RNA polymerase subunit alpha5.8e-17291.57Show/hide
Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNK+K                +K+K  ++K  FIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQK----------------EKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

Q9MTJ3 DNA-directed RNA polymerase subunit alpha1.8e-14479.39Show/hide
Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREK+RVSTRTL+WKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGT +ASICVKGPGCVTAQDI+LPPSVEI+DNTQHIA+L EPI+LCI L+IERNRGYHI++PNNFQD SYP+DA+FMPVRN NHSIHSY N NE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEE-------KEN-------FHLKNNKQKEKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDLLN
        LEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEEE       K N       FH K  K ++ +   ++K  FIDQ ELPPRIYN LK   IHTL DLLN
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEE-------KEN-------FHLKNNKQKEKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDLLN

Query:  NSPDELMKIKHFRIEDVKHILDILEMEKNF
         S ++LMK+KHFRIEDVK ILDILE+EK F
Subjt:  NSPDELMKIKHFRIEDVKHILDILEMEKNF

Arabidopsis top hitse value%identityAlignment
ATCG00740.1 RNA polymerase subunit alpha7.8e-14074.77Show/hide
Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREK++VSTRTL+WKCVES+ DSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAKSE IPH+YS I GIQESVHEILMNL EIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTR+A ICV+GPG +TA+DIILPP+VEI+DNTQHIA LTEPI+LCIELKIERNRGY ++  NNF+D SYP+DA+FMPV N NHSIHSY NGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNN------------------KQKEKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLF
        LEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE  E F+L+NN                  ++K+K K  + +  FIDQ ELPPRIYNCLK+ NIHTL 
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNN------------------KQKEKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLF

Query:  DLLNNSPDELMKIKHFRIEDVKHILDILE
        DLLNNS ++L+KI+HF +EDVK ILDILE
Subjt:  DLLNNSPDELMKIKHFRIEDVKHILDILE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCGAGAGAAAATAAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACT
TATGAAGGGGCAAGCGGATACTATAGGCATTGCAATGCGAAAAGCTTTGCTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAAT
ACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTCTATGGAACTCGTGATGCGTCTATTTGTGTC
AAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAACCAATTAATTTGTGTAT
TGAATTAAAGATCGAGAGGAATCGCGGATATCATATACAAACGCCAAATAATTTTCAAGACGCAAGTTATCCTATGGATGCTATATTCATGCCTGTTCGAAATGTTAATC
ATAGTATTCATTCTTATGTAAATGGGAATGAAAACCAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGG
AATTTGATTGATTTATTTATTCCTTTTTTACATGCGGAAGAAGAAAAAGAAAACTTCCATTTAAAAAATAATAAACAAAAAGAAAAAGAAAAAAGAAATAGCATTAAAAT
ATATTTTATTGACCAATCAGAATTGCCTCCTAGGATCTATAATTGCCTCAAAAGGTGCAATATACATACATTATTTGACCTTTTGAATAATAGTCCAGACGAACTTATGA
AAATCAAACATTTTCGCATAGAAGACGTAAAACATATATTAGACATTCTCGAAATGGAAAAGAATTTTGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCGAGAGAAAATAAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACT
TATGAAGGGGCAAGCGGATACTATAGGCATTGCAATGCGAAAAGCTTTGCTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAAT
ACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTCTATGGAACTCGTGATGCGTCTATTTGTGTC
AAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAACCAATTAATTTGTGTAT
TGAATTAAAGATCGAGAGGAATCGCGGATATCATATACAAACGCCAAATAATTTTCAAGACGCAAGTTATCCTATGGATGCTATATTCATGCCTGTTCGAAATGTTAATC
ATAGTATTCATTCTTATGTAAATGGGAATGAAAACCAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGG
AATTTGATTGATTTATTTATTCCTTTTTTACATGCGGAAGAAGAAAAAGAAAACTTCCATTTAAAAAATAATAAACAAAAAGAAAAAGAAAAAAGAAATAGCATTAAAAT
ATATTTTATTGACCAATCAGAATTGCCTCCTAGGATCTATAATTGCCTCAAAAGGTGCAATATACATACATTATTTGACCTTTTGAATAATAGTCCAGACGAACTTATGA
AAATCAAACATTTTCGCATAGAAGACGTAAAACATATATTAGACATTCTCGAAATGGAAAAGAATTTTGTATAA
Protein sequenceShow/hide protein sequence
MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICV
KGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASR
NLIDLFIPFLHAEEEKENFHLKNNKQKEKEKRNSIKIYFIDQSELPPRIYNCLKRCNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNFV