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PI0018819 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018819
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr03:10942767..10943094
RNA-Seq ExpressionPI0018819
SyntenyPI0018819
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044249 - cellular biosynthetic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:1901576 - organic substance biosynthetic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025506.1 transcription initiation factor TFIID subunit 2-like [Cucumis melo var. makuwa]1.2e-1959.78Show/hide
Query:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDP-----------KKTMESVAYGSMVLNLSNNVLRELIDQETTYEMWKKLDEHY
        M V RYDIEKFD KG FTLWKAK+K I+ Q+K LKA  DP           K+TME+ AYG++VLNLS+NVLRE+I +ET Y MW+KL+E Y
Subjt:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDP-----------KKTMESVAYGSMVLNLSNNVLRELIDQETTYEMWKKLDEHY

XP_016899859.1 PREDICTED: uncharacterized protein LOC107990692 [Cucumis melo]3.0e-1563.16Show/hide
Query:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDPKK-----------TMESVAYGSMVLNLSNNVLRELI
        + VARYDIEKFD KGDFTLWKAKIK I+ Q+K LKA TDP+K           TME+ AY ++VLNLS++VLRELI
Subjt:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDPKK-----------TMESVAYGSMVLNLSNNVLRELI

XP_038885928.1 uncharacterized protein LOC120076236 [Benincasa hispida]1.3e-1548.96Show/hide
Query:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDP-----------KKTMESVAYGSMVLNLSNNVLRELIDQETTYEMWKKLDEHYQFKD
        MT  RY+IEKF+ K DF LWKAKIKV++ ++K L A TDP           K+T+ES AYG++VLN+ ++VLR+++D+ T Y +W KL++ Y  KD
Subjt:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDP-----------KKTMESVAYGSMVLNLSNNVLRELIDQETTYEMWKKLDEHYQFKD

XP_038887098.1 uncharacterized protein LOC120077280 [Benincasa hispida]2.3e-1548.45Show/hide
Query:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDP-----------KKTMESVAYGSMVLNLSNNVLRELIDQETTYEMWKKLDEHYQFKDF
        M   +Y+IEKFD+K DF L KAKIK ++ Q+K L A TDP           K+T+ES AYG+++LN++++VLR+++DQ T Y +W KL+E Y  KDF
Subjt:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDP-----------KKTMESVAYGSMVLNLSNNVLRELIDQETTYEMWKKLDEHYQFKDF

XP_038890043.1 uncharacterized protein LOC120079747 [Benincasa hispida]3.9e-1548.48Show/hide
Query:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDP-----------KKTMESVAYGSMVLNLSNNVLRELIDQETTYEMWKKLDEHYQFKDFQD
        M   RY+IEKFD K DF LWK KIKV++ Q+K L A TDP           K+T+E  A G++VLN+++NVLR++I+Q T Y +W KL+E Y  KD  +
Subjt:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDP-----------KKTMESVAYGSMVLNLSNNVLRELIDQETTYEMWKKLDEHYQFKDFQD

TrEMBL top hitse value%identityAlignment
A0A1S4DV47 uncharacterized protein LOC1079906921.4e-1563.16Show/hide
Query:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDPKK-----------TMESVAYGSMVLNLSNNVLRELI
        + VARYDIEKFD KGDFTLWKAKIK I+ Q+K LKA TDP+K           TME+ AY ++VLNLS++VLRELI
Subjt:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDPKK-----------TMESVAYGSMVLNLSNNVLRELI

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-1341.67Show/hide
Query:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDPK-----------KTMESVAYGSMVLNLSNNVLRELIDQETTYEMWKKLDEHYQFKD
        MT  +++IEKFD  GDFTLW  +I  I+  +K LKA  DPK           +T+E VAY ++++N+++NVLR++I++ T +  W+KL   Y+ KD
Subjt:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDPK-----------KTMESVAYGSMVLNLSNNVLRELIDQETTYEMWKKLDEHYQFKD

A0A5A7UZ07 Retrotransposon protein, putative, Ty1-copia subclass1.1e-1241.67Show/hide
Query:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDPK-----------KTMESVAYGSMVLNLSNNVLRELIDQETTYEMWKKLDEHYQFKD
        MT  +++IEKFD  GDFTL   +I  I+  +K LKA  DPK           +T+E VAYG++++N++ NVLR++I++ T +  W+KL   Y+ KD
Subjt:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDPK-----------KTMESVAYGSMVLNLSNNVLRELIDQETTYEMWKKLDEHYQFKD

A0A5C7HB65 gag_pre-integrs domain-containing protein2.2e-1141.76Show/hide
Query:  RYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDPKKTMES-----------VAYGSMVLNLSNNVLRELIDQETTYEMWKKLDEHYQFK
        ++DI+KFD  GDF +W+ K+K +++Q+K LKA   P+K  +S           +A G+++LNLS+NVLRE+ D++T  ++WKKL+  Y  K
Subjt:  RYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDPKKTMES-----------VAYGSMVLNLSNNVLRELIDQETTYEMWKKLDEHYQFK

A0A5D3BQH4 Transcription initiation factor TFIID subunit 2-like5.7e-2059.78Show/hide
Query:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDP-----------KKTMESVAYGSMVLNLSNNVLRELIDQETTYEMWKKLDEHY
        M V RYDIEKFD KG FTLWKAK+K I+ Q+K LKA  DP           K+TME+ AYG++VLNLS+NVLRE+I +ET Y MW+KL+E Y
Subjt:  MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDP-----------KKTMESVAYGSMVLNLSNNVLRELIDQETTYEMWKKLDEHY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGTAGCAAGATATGATATTGAGAAGTTCGATGACAAGGGAGATTTTACCTTATGGAAAGCAAAGATTAAAGTTATCATTAACCAAAAAAAGACATTGAAAGCCCC
CACGGATCCAAAAAAAACTATGGAAAGTGTAGCTTATGGTTCTATGGTTCTAAACCTAAGTAACAATGTCCTTAGGGAGCTAATTGATCAAGAAACAACTTATGAAATGT
GGAAGAAATTGGATGAACATTATCAGTTCAAAGACTTTCAAGATGGACAACAACAAGTCATTGAAAGAAAATCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGTAGCAAGATATGATATTGAGAAGTTCGATGACAAGGGAGATTTTACCTTATGGAAAGCAAAGATTAAAGTTATCATTAACCAAAAAAAGACATTGAAAGCCCC
CACGGATCCAAAAAAAACTATGGAAAGTGTAGCTTATGGTTCTATGGTTCTAAACCTAAGTAACAATGTCCTTAGGGAGCTAATTGATCAAGAAACAACTTATGAAATGT
GGAAGAAATTGGATGAACATTATCAGTTCAAAGACTTTCAAGATGGACAACAACAAGTCATTGAAAGAAAATCTTAG
Protein sequenceShow/hide protein sequence
MTVARYDIEKFDDKGDFTLWKAKIKVIINQKKTLKAPTDPKKTMESVAYGSMVLNLSNNVLRELIDQETTYEMWKKLDEHYQFKDFQDGQQQVIERKS