; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0018824 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018824
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr12:3693983..3694678
RNA-Seq ExpressionPI0018824
SyntenyPI0018824
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ99320.1 hypothetical protein E5676_scaffold248G005340 [Cucumis melo var. makuwa]3.4e-2549.4Show/hide
Query:  TSNMVVSSVPNNNNLEGEITFGSISFDTSSNKYLDSPNGFSKNNSRLDTEENCSSPSIKGSRILARIYKEIARHRRGKSTIQSYFTNLKTLWDKLA-AYN
        T     S  P+ +NL+  +            K++ SPNG  K        +   S       IL +IY+EIA HR+G S+I SYFT LK LWD+LA AYN
Subjt:  TSNMVVSSVPNNNNLEGEITFGSISFDTSSNKYLDSPNGFSKNNSRLDTEENCSSPSIKGSRILARIYKEIARHRRGKSTIQSYFTNLKTLWDKLA-AYN

Query:  YDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPFPTVDTAYSVIIREGKRRK
           PQ SSDAI + L E ME+EKV+QFL+GL+DSYSS   KIL M+PFPTVDTA+SVIIR+  RRK
Subjt:  YDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPFPTVDTAYSVIIREGKRRK

XP_022137024.1 uncharacterized protein LOC111008588 [Momordica charantia]2.2e-2452.42Show/hide
Query:  RIYKEIARHRRGKSTIQSYFTNLKTLWDKLAAYNYDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPFPTVDTAYSVIIREGKRRK
        +IYK+IA HR+  S++ SYFT LK LWD+L  Y+ DVPQ  S   + KL   +E+EKVMQFL+GL++SYS+I P+ILL++PFPT++ AYS+IIRE KR +
Subjt:  RIYKEIARHRRGKSTIQSYFTNLKTLWDKLAAYNYDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPFPTVDTAYSVIIREGKRRK

Query:  SDSSQEIVAEKVTHEQQLASSEGS
          +S E+VA KV   + L  ++ S
Subjt:  SDSSQEIVAEKVTHEQQLASSEGS

XP_022954810.1 serine/arginine repetitive matrix protein 1-like [Cucurbita moschata]2.0e-2251.41Show/hide
Query:  EENCSSPSIKGSRILARIYKEIARHRRGKSTIQSYFTNLKTLWDKLAAYNYDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPFPT
        EE CSS     SR+  +IYKEIA H +G S+I SY T LK LWD+L AY  D P+ S  +   K  E +E+EKVMQFL+GL+DSYS+I  +IL MKPFPT
Subjt:  EENCSSPSIKGSRILARIYKEIARHRRGKSTIQSYFTNLKTLWDKLAAYNYDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPFPT

Query:  VDTAYSVIIREGKRRKSDSSQEIVAEKVTHEQQLASSEGSFD
        V+ A   I+RE KRR+   S EIVA KV     L  +  S +
Subjt:  VDTAYSVIIREGKRRKSDSSQEIVAEKVTHEQQLASSEGSFD

XP_023542694.1 uncharacterized protein LOC111802521 [Cucurbita pepo subsp. pepo]2.4e-2352.11Show/hide
Query:  EENCSSPSIKGSRILARIYKEIARHRRGKSTIQSYFTNLKTLWDKLAAYNYDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPFPT
        EE CSS     SR+  +IYKEIA H +G S+I SY T LK LWD+L AY  D+P+ S  +   K  E +E+EKVMQFL+GLDDSYS+I  +IL MKPFPT
Subjt:  EENCSSPSIKGSRILARIYKEIARHRRGKSTIQSYFTNLKTLWDKLAAYNYDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPFPT

Query:  VDTAYSVIIREGKRRKSDSSQEIVAEKVTHEQQLASSEGSFD
        V+ A   I+RE KRR+   S EIVA KV     L  +  S +
Subjt:  VDTAYSVIIREGKRRKSDSSQEIVAEKVTHEQQLASSEGSFD

XP_038893970.1 uncharacterized protein LOC120082755 isoform X1 [Benincasa hispida]6.3e-2442.61Show/hide
Query:  RGFMSPRRSSGRSEASLNPQSVTLNGQLAANNVKSSNTSNMVVSSVPNNNNLEGEIT-------FGSISFDTSS-NKYLDSP------NGFSKNNSRLDT
        RGF+SPRRS  R  A+    S     Q   N+ +SS  S++  S  P+  NL+ E+        F S S   S+ N    +P       G  K++     
Subjt:  RGFMSPRRSSGRSEASLNPQSVTLNGQLAANNVKSSNTSNMVVSSVPNNNNLEGEIT-------FGSISFDTSS-NKYLDSP------NGFSKNNSRLDT

Query:  EENCSSPSI-------KGSRILARIYKEIARHRRGKSTIQSYFTNLKTLWDKLAAYNYDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKIL
         ++ SS +I           IL +IY+EIA HR G STI+SYF NLK LWD+ AA       SSSD IV +  E ME+EK+MQFLLGL+DSYSS+  +IL
Subjt:  EENCSSPSI-------KGSRILARIYKEIARHRRGKSTIQSYFTNLKTLWDKLAAYNYDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKIL

Query:  LMKPFPTVDTAYSVIIREGKRRKSDSSQEI
        L++P PTVD AYS+I+RE K RKS +S+++
Subjt:  LMKPFPTVDTAYSVIIREGKRRKSDSSQEI

TrEMBL top hitse value%identityAlignment
A0A0A0LRX9 Uncharacterized protein6.0e-2051.35Show/hide
Query:  ILARIYKEIARHRRGKSTIQSYFTNLKTLWDKLAA--YNYDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPFPTVDTAYSVIIRE
        +L +IY+ IA HR+G ++I+SYF NLK LW++ AA   N + PQSSS+  + +  E ME+EK+MQFLLGL+DSYS +  +IL ++P PTVD AYS+I+ E
Subjt:  ILARIYKEIARHRRGKSTIQSYFTNLKTLWDKLAA--YNYDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPFPTVDTAYSVIIRE

Query:  GKRRKSDSSQE
         K RKS  +++
Subjt:  GKRRKSDSSQE

A0A5D3BHR0 Uncharacterized protein1.6e-2549.4Show/hide
Query:  TSNMVVSSVPNNNNLEGEITFGSISFDTSSNKYLDSPNGFSKNNSRLDTEENCSSPSIKGSRILARIYKEIARHRRGKSTIQSYFTNLKTLWDKLA-AYN
        T     S  P+ +NL+  +            K++ SPNG  K        +   S       IL +IY+EIA HR+G S+I SYFT LK LWD+LA AYN
Subjt:  TSNMVVSSVPNNNNLEGEITFGSISFDTSSNKYLDSPNGFSKNNSRLDTEENCSSPSIKGSRILARIYKEIARHRRGKSTIQSYFTNLKTLWDKLA-AYN

Query:  YDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPFPTVDTAYSVIIREGKRRK
           PQ SSDAI + L E ME+EKV+QFL+GL+DSYSS   KIL M+PFPTVDTA+SVIIR+  RRK
Subjt:  YDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPFPTVDTAYSVIIREGKRRK

A0A6J1C5Z8 uncharacterized protein LOC1110085881.1e-2452.42Show/hide
Query:  RIYKEIARHRRGKSTIQSYFTNLKTLWDKLAAYNYDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPFPTVDTAYSVIIREGKRRK
        +IYK+IA HR+  S++ SYFT LK LWD+L  Y+ DVPQ  S   + KL   +E+EKVMQFL+GL++SYS+I P+ILL++PFPT++ AYS+IIRE KR +
Subjt:  RIYKEIARHRRGKSTIQSYFTNLKTLWDKLAAYNYDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPFPTVDTAYSVIIREGKRRK

Query:  SDSSQEIVAEKVTHEQQLASSEGS
          +S E+VA KV   + L  ++ S
Subjt:  SDSSQEIVAEKVTHEQQLASSEGS

A0A6J1C7L7 uncharacterized protein LOC1110089862.7e-2054.87Show/hide
Query:  TEENCSSPSIKGSRILARIYKEIARHRRGKSTIQSYFTNLKTLWDKLAAYNYDVPQSSS-DAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPF
        T+E C SP     RIL  IYK+IA HR+G S+I SYFT L+TLW++L  Y+ D+PQ  S  A   K  + +E+EKVMQFL+GL+DSYS+I  +ILL++PF
Subjt:  TEENCSSPSIKGSRILARIYKEIARHRRGKSTIQSYFTNLKTLWDKLAAYNYDVPQSSS-DAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPF

Query:  PTVDTAYSVIIRE
        PTV+ AYS+II +
Subjt:  PTVDTAYSVIIRE

A0A6J1GTG4 serine/arginine repetitive matrix protein 1-like9.9e-2351.41Show/hide
Query:  EENCSSPSIKGSRILARIYKEIARHRRGKSTIQSYFTNLKTLWDKLAAYNYDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPFPT
        EE CSS     SR+  +IYKEIA H +G S+I SY T LK LWD+L AY  D P+ S  +   K  E +E+EKVMQFL+GL+DSYS+I  +IL MKPFPT
Subjt:  EENCSSPSIKGSRILARIYKEIARHRRGKSTIQSYFTNLKTLWDKLAAYNYDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPFPT

Query:  VDTAYSVIIREGKRRKSDSSQEIVAEKVTHEQQLASSEGSFD
        V+ A   I+RE KRR+   S EIVA KV     L  +  S +
Subjt:  VDTAYSVIIREGKRRKSDSSQEIVAEKVTHEQQLASSEGSFD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAAGAGGGTTTATGAGTCCCCGAAGATCCTCAGGCCGATCAGAGGCATCGCTAAATCCTCAAAGCGTCACCTTAAATGGACAACTCGCAGCTAACAATGTTAAATC
TTCAAATACTTCAAACATGGTCGTCTCCTCAGTTCCAAACAACAACAATTTAGAAGGTGAGATTACATTTGGTTCAATATCTTTTGATACGAGTAGTAATAAATATTTGG
ATTCTCCAAATGGTTTTTCCAAGAATAACTCAAGATTAGATACAGAGGAAAATTGTTCTTCTCCAAGCATTAAGGGGTCGAGAATTTTAGCTAGAATTTACAAGGAAATT
GCGCGTCATCGTCGAGGAAAATCAACTATTCAATCTTACTTCACAAATCTCAAGACGTTATGGGACAAACTTGCAGCCTATAATTATGACGTGCCTCAATCTTCATCCGA
TGCAATAGTTATTAAACTAAGGGAGAGTATGGAGAAAGAAAAGGTAATGCAATTTCTTTTGGGATTAGACGATTCTTATTCCTCCATTCTCCCTAAAATTCTTCTTATGA
AGCCATTTCCAACCGTGGATACAGCTTATTCTGTAATAATTCGAGAAGGAAAACGTAGGAAATCGGATTCGTCTCAGGAGATTGTTGCGGAAAAAGTAACGCATGAACAA
CAATTGGCTTCTTCTGAAGGGTCATTCGACTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGATAAGAGGGTTTATGAGTCCCCGAAGATCCTCAGGCCGATCAGAGGCATCGCTAAATCCTCAAAGCGTCACCTTAAATGGACAACTCGCAGCTAACAATGTTAAATC
TTCAAATACTTCAAACATGGTCGTCTCCTCAGTTCCAAACAACAACAATTTAGAAGGTGAGATTACATTTGGTTCAATATCTTTTGATACGAGTAGTAATAAATATTTGG
ATTCTCCAAATGGTTTTTCCAAGAATAACTCAAGATTAGATACAGAGGAAAATTGTTCTTCTCCAAGCATTAAGGGGTCGAGAATTTTAGCTAGAATTTACAAGGAAATT
GCGCGTCATCGTCGAGGAAAATCAACTATTCAATCTTACTTCACAAATCTCAAGACGTTATGGGACAAACTTGCAGCCTATAATTATGACGTGCCTCAATCTTCATCCGA
TGCAATAGTTATTAAACTAAGGGAGAGTATGGAGAAAGAAAAGGTAATGCAATTTCTTTTGGGATTAGACGATTCTTATTCCTCCATTCTCCCTAAAATTCTTCTTATGA
AGCCATTTCCAACCGTGGATACAGCTTATTCTGTAATAATTCGAGAAGGAAAACGTAGGAAATCGGATTCGTCTCAGGAGATTGTTGCGGAAAAAGTAACGCATGAACAA
CAATTGGCTTCTTCTGAAGGGTCATTCGACTCATAG
Protein sequenceShow/hide protein sequence
MIRGFMSPRRSSGRSEASLNPQSVTLNGQLAANNVKSSNTSNMVVSSVPNNNNLEGEITFGSISFDTSSNKYLDSPNGFSKNNSRLDTEENCSSPSIKGSRILARIYKEI
ARHRRGKSTIQSYFTNLKTLWDKLAAYNYDVPQSSSDAIVIKLRESMEKEKVMQFLLGLDDSYSSILPKILLMKPFPTVDTAYSVIIREGKRRKSDSSQEIVAEKVTHEQ
QLASSEGSFDS