CuGenDBv2

Gene ID	PI0018857
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerase subunit alpha
Genome location	tig00000638:58382..59383
RNA-Seq Expression	PI0018857
Synteny	PI0018857
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR011260 - RNA polymerase, alpha subunit, C-terminal IPR011262 - DNA-directed RNA polymerase, insert domain IPR011263 - DNA-directed RNA polymerase, RpoA/D/Rpb3-type IPR011773 - DNA-directed RNA polymerase, alpha subunit IPR036603 - RNA polymerase, RBP11-like subunit IPR036643 - DNA-directed RNA polymerase, insert domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QHB75996.1 RNA polymerase alpha subunit [Cucumis melo subsp. melo]

1.6e-185

99.1

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE  ENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

QJF46416.1 RNA polymerase alpha subunit [Cucumis melo]

5.5e-186

98.49

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH KNNKQKVTLPLFTFHEKLAKLRKKKKE ALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

YP_004841815.1 RNA polymerase alpha subunit [Cucumis melo subsp. melo]

5.5e-186

98.49

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH KNNKQKVTLPLFTFHEKLAKLRKKKKE ALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

YP_009004075.1 RNA polymerase alpha subunit [Cucumis hystrix]

1.4e-186

98.8

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNK+KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

YP_009346515.1 RNA polymerase alpha subunit [Cucumis x hytivus]

4.9e-187

99.1

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

TrEMBL top hits

e value

%identity

Alignment

A0A1P8C7R7 DNA-directed RNA polymerase subunit alpha

2.4e-187

99.1

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

A0A1X9Q1P4 DNA-directed RNA polymerase subunit alpha

6.9e-187

98.8

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNK+KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

A0A218KG62 DNA-directed RNA polymerase subunit alpha

6.9e-187

98.8

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNK+KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

A0A4Y5RDR4 DNA-directed RNA polymerase subunit alpha

2.4e-187

99.1

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

W8E706 DNA-directed RNA polymerase subunit alpha

6.9e-187

98.8

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNK+KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

SwissProt top hits

e value

%identity

Alignment

Q09WY5 DNA-directed RNA polymerase subunit alpha

2.4e-160

85.37

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        M +EK+ VSTR L+WKCVESRADSKRLYYGRF+L+PLM+GQADTIGIAMR+ALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPG VTAQDIILPPSVEIVDNTQHIANLTEPI LCIEL+IERNRGY I+TPNNFQ+ SYP+DA+FMPVRN NHSIHSYVNGNENQEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPF HAEE     HL+NN+ K TLPLF FH +LAK RK KKEIALKYI+IDQSELPPR+YNCLKR NI+T  +L
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEM
        LNNS +ELMKI+ FRIEDVKHILD+LE+
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEM

Q2PMQ3 DNA-directed RNA polymerase subunit alpha

1.8e-163

86.23

Show/hide

Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTL+WKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMR+ LLGEIEGTCITR KSEKIPHEYSTI+GI+ESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASIC KGPG VTAQDIILPPSVEIVDNTQHIAN+TEP+NLCIELKIERNRGY I+T  NFQD SYP+DA FMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLA--KLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLF
        LEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE  +NF+L+NN+ KVTLPLFTFH+ LA  KLRKKKKEIALK IFIDQ ELPPRIYNCLKR NIHTL 
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLA--KLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLF

Query:  DLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        +LLNNS ++L+KI+HFR+EDVK+ILD LE+EK+F
Subjt:  DLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF

Q49KW6 DNA-directed RNA polymerase subunit alpha

4.2e-165

87.35

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREK+RVSTRTL+WKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTR+ASICVKGPGCVTAQDIILP SVEIVDNTQ+IANLTEPINLCI L+IERNRGYHI+TP NFQD SYP+DA+FMPVRN NHSIHSY NGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE  EN HL+NN+ KVTLP FTFH++LAKLRK KKEIALK IFIDQ ELPPR YNCLKR NIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LN S ++LMK+++FRIEDVK ILD LE+EK F
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

Q4VZK3 DNA-directed RNA polymerase subunit alpha

1.9e-189

98.8

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNK+KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

Q9MTJ3 DNA-directed RNA polymerase subunit alpha

1.2e-159

84.94

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREK+RVSTRTL+WKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGT +ASICVKGPGCVTAQDI+LPPSVEI+DNTQHIA+L EPI+LCI L+IERNRGYHI++PNNFQD SYP+DA+FMPVRN NHSIHSY N NE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
        LEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEE  EN HL  NK  VT PLFTFH+KLAKLRK K EIALK IFIDQ ELPPRIYN LK   IHTL DL
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL

Query:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF
        LN S ++LMK+KHFRIEDVK ILDILE+EK F
Subjt:  LNNSPDELMKIKHFRIEDVKHILDILEMEKNF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00740.1 RNA polymerase subunit alpha

7.2e-152

79.33

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Query:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL
        MVREK++VSTRTL+WKCVES+ DSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAKSE IPH+YS I GIQESVHEILMNL EIVLRSNL
Subjt:  MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNL

Query:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF
        YGTR+A ICV+GPG +TA+DIILPP+VEI+DNTQHIA LTEPI+LCIELKIERNRGY ++  NNF+D SYP+DA+FMPV N NHSIHSY NGNE QEILF
Subjt:  YGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILF

Query:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKK--KEIALKYIFIDQSELPPRIYNCLKRCNIHTLF
        LEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE  E F+L+NN+ +VTLP F FH +L  LRKKK  KE+A +YIFIDQ ELPPRIYNCLK+ NIHTL 
Subjt:  LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKK--KEIALKYIFIDQSELPPRIYNCLKRCNIHTLF

Query:  DLLNNSPDELMKIKHFRIEDVKHILDILE
        DLLNNS ++L+KI+HF +EDVK ILDILE
Subjt:  DLLNNSPDELMKIKHFRIEDVKHILDILE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTTCGAGAGAAAATAAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACT
TATGAAGGGGCAAGCGGATACTATAGGCATTGCAATGCGAAAAGCTTTGCTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAAT
ACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTCTATGGAACTCGTGATGCGTCTATTTGTGTC
AAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAACCAATTAATTTGTGTAT
TGAATTAAAGATCGAGAGGAATCGCGGATATCATATACAAACGCCAAATAATTTTCAAGACGCAAGTTATCCTATGGATGCTATATTCATGCCTGTTCGAAATGTTAATC
ATAGTATTCATTCTTATGTAAATGGGAATGAAAACCAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGG
AATTTGATTGATTTATTTATTCCTTTTTTACATGCGGAAGAAGAAAAAGAAAACTTCCATTTAAAAAATAATAAACAAAAAGTTACTTTACCCCTTTTTACTTTTCATGA
GAAATTGGCGAAACTAAGGAAAAAGAAAAAAGAAATAGCATTAAAATATATTTTTATTGACCAATCAGAATTGCCTCCTAGGATCTATAATTGCCTCAAAAGGTGCAATA
TACATACATTATTTGACCTTTTGAATAATAGTCCAGACGAACTTATGAAAATCAAACATTTTCGCATAGAAGACGTAAAACATATATTAGACATTCTCGAAATGGAAAAG
AATTTTGTATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICV
KGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASR
NLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEK
NFV

PI0018857 (gene) of Melon (PI 482460) v1 genome