; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0018873 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018873
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr08:1522557..1524389
RNA-Seq ExpressionPI0018873
SyntenyPI0018873
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-3967.94Show/hide
Query:  DRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIAD
        D ATGA +ETFAD GSNV N FND VPL D +++DI T+YSQGV MS D++ G R G++S+ RN SSGSKRKRG +H E+VEVI +A +F NDQL+ I D
Subjt:  DRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIAD

Query:  WPKEKRATEVELRAEVVKQLDDIPKLRSRDR
        WPKEKRATEVELR EVVKQL DIP+LRS+DR
Subjt:  WPKEKRATEVELRAEVVKQLDDIPKLRSRDR

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]4.4e-4672.73Show/hide
Query:  RDRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIA
        +DRAT AR+ETFADVGSNVPN FN  VPLDD +D+DIP MYSQGV MSPD+M G R G++S+ +NCSSGSKRK+G +H E VEVI++A++F NDQL+AIA
Subjt:  RDRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIA

Query:  DWPKEKRATEVELRAEVVKQLDDIPKLRSRDR
        +WPKEKRATEVELRAEV+KQL DIP+L+SRDR
Subjt:  DWPKEKRATEVELRAEVVKQLDDIPKLRSRDR

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]4.5e-4372.73Show/hide
Query:  RDRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIA
        +D+AT AR+ETFADVGSN+PN FND VPL D + EDIPTMYSQGV MS D+M GTR G++S+ RNCSS SKRK+G QH E VEVIR+AM F NDQL+AIA
Subjt:  RDRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIA

Query:  DWPKEKRATEVELRAEVVKQLDDIPKLRSRDR
        DW KEKRA +VELRA VVKQL DIPKL++RDR
Subjt:  DWPKEKRATEVELRAEVVKQLDDIPKLRSRDR

KAA0056515.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.2e-3668.91Show/hide
Query:  RDRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIA
        +DRAT  R+ETF+ VGSNVPN FND VPL D +++DIP MYSQGV MS D+M G R G++S+ RNCSSGSKRKRG +H E+VEVIR+ M F N+QL+ IA
Subjt:  RDRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIA

Query:  DWPKEKRATEVELRAEVVK
        DWPK+KRATEVEL AEVVK
Subjt:  DWPKEKRATEVELRAEVVK

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]6.3e-4571.97Show/hide
Query:  RDRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIA
        +DRATGAR+ETF +VGSNV N FND++PL D +DEDIPTMYSQGV MSPD+M G R G++S+ RNCSS SKRKRG +  E VEVIR+ M+F N+QL+AIA
Subjt:  RDRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIA

Query:  DWPKEKRATEVELRAEVVKQLDDIPKLRSRDR
        DWPKEKRA EVE+RA+VVKQL DIPKLRS+DR
Subjt:  DWPKEKRATEVELRAEVVKQLDDIPKLRSRDR

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859533.1e-4571.97Show/hide
Query:  RDRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIA
        +DRATGAR+ETF +VGSNV N FND++PL D +DEDIPTMYSQGV MSPD+M G R G++S+ RNCSS SKRKRG +  E VEVIR+ M+F N+QL+AIA
Subjt:  RDRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIA

Query:  DWPKEKRATEVELRAEVVKQLDDIPKLRSRDR
        DWPKEKRA EVE+RA+VVKQL DIPKLRS+DR
Subjt:  DWPKEKRATEVELRAEVVKQLDDIPKLRSRDR

A0A5A7SQU2 Putative nuclease HARBI12.1e-4672.73Show/hide
Query:  RDRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIA
        +DRAT AR+ETFADVGSNVPN FN  VPLDD +D+DIP MYSQGV MSPD+M G R G++S+ +NCSSGSKRK+G +H E VEVI++A++F NDQL+AIA
Subjt:  RDRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIA

Query:  DWPKEKRATEVELRAEVVKQLDDIPKLRSRDR
        +WPKEKRATEVELRAEV+KQL DIP+L+SRDR
Subjt:  DWPKEKRATEVELRAEVVKQLDDIPKLRSRDR

A0A5A7U0H7 Retrotransposon protein3.1e-4571.97Show/hide
Query:  RDRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIA
        +DRATGAR+ETF +VGSNV N FND++PL D +DEDIPTMYSQGV MSPD+M G R G++S+ RNCSS SKRKRG +  E VEVIR+ M+F N+QL+AIA
Subjt:  RDRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIA

Query:  DWPKEKRATEVELRAEVVKQLDDIPKLRSRDR
        DWPKEKRA EVE+RA+VVKQL DIPKLRS+DR
Subjt:  DWPKEKRATEVELRAEVVKQLDDIPKLRSRDR

A0A5D3BZU3 Retrotransposon protein1.5e-3967.94Show/hide
Query:  DRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIAD
        D ATGA +ETFAD GSNV N FND VPL D +++DI T+YSQGV MS D++ G R G++S+ RN SSGSKRKRG +H E+VEVI +A +F NDQL+ I D
Subjt:  DRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIAD

Query:  WPKEKRATEVELRAEVVKQLDDIPKLRSRDR
        WPKEKRATEVELR EVVKQL DIP+LRS+DR
Subjt:  WPKEKRATEVELRAEVVKQLDDIPKLRSRDR

A0A5D3CVB7 Retrotransposon protein2.2e-4372.73Show/hide
Query:  RDRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIA
        +D+AT AR+ETFADVGSN+PN FND VPL D + EDIPTMYSQGV MS D+M GTR G++S+ RNCSS SKRK+G QH E VEVIR+AM F NDQL+AIA
Subjt:  RDRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFANDQLRAIA

Query:  DWPKEKRATEVELRAEVVKQLDDIPKLRSRDR
        DW KEKRA +VELRA VVKQL DIPKL++RDR
Subjt:  DWPKEKRATEVELRAEVVKQLDDIPKLRSRDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAATATCAGTGCATCATCGCGGAACGCAACTTGTTTGATAATTAGGTCAAGAGATCGGGCAACAGGAGCACGTGCGGAGACGTTTGCTGACGTGGGATCTAATGT
GCCAAACAGTTTCAATGACAGTGTTCCACTTGATGATCTATATGACGAAGACATCCCGACGATGTATAGCCAAGGGGTTGATATGTCTCCAGATGACATGATAGGAACAC
GTACAGGTCGGTCAAGTGATGGACGAAACTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGGCCAACATAGTGAAATAGTGGAGGTGATCAGGAATGCAATGGACTTTGCA
AATGATCAATTGAGGGCAATTGCGGATTGGCCAAAGGAGAAGCGTGCAACGGAGGTCGAATTGCGTGCTGAAGTCGTGAAACAACTGGATGATATCCCTAAACTACGGAG
TCGAGATAGGAGAGAAAATGATGGTACAGCTCCGCCTCTTCTAGATGGTGGTGGTGCAACTTTGCCTCTTCTAGATGATGATAATGGTGCAACTCTGCCTCTCGATGATG
ATGGTGCAGCTCCGCCTCTCAAAGATGATGGTGCAGCTTCGCCTTCACCTCTCCAAAATGATGGTAATGCAGCTCCACCTTTAGCTCTCCAAAATGGCGATGGTGTAGTG
CTCAATCATTCCTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAATATCAGTGCATCATCGCGGAACGCAACTTGTTTGATAATTAGGTCAAGAGATCGGGCAACAGGAGCACGTGCGGAGACGTTTGCTGACGTGGGATCTAATGT
GCCAAACAGTTTCAATGACAGTGTTCCACTTGATGATCTATATGACGAAGACATCCCGACGATGTATAGCCAAGGGGTTGATATGTCTCCAGATGACATGATAGGAACAC
GTACAGGTCGGTCAAGTGATGGACGAAACTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGGCCAACATAGTGAAATAGTGGAGGTGATCAGGAATGCAATGGACTTTGCA
AATGATCAATTGAGGGCAATTGCGGATTGGCCAAAGGAGAAGCGTGCAACGGAGGTCGAATTGCGTGCTGAAGTCGTGAAACAACTGGATGATATCCCTAAACTACGGAG
TCGAGATAGGAGAGAAAATGATGGTACAGCTCCGCCTCTTCTAGATGGTGGTGGTGCAACTTTGCCTCTTCTAGATGATGATAATGGTGCAACTCTGCCTCTCGATGATG
ATGGTGCAGCTCCGCCTCTCAAAGATGATGGTGCAGCTTCGCCTTCACCTCTCCAAAATGATGGTAATGCAGCTCCACCTTTAGCTCTCCAAAATGGCGATGGTGTAGTG
CTCAATCATTCCTACTAG
Protein sequenceShow/hide protein sequence
MKNISASSRNATCLIIRSRDRATGARAETFADVGSNVPNSFNDSVPLDDLYDEDIPTMYSQGVDMSPDDMIGTRTGRSSDGRNCSSGSKRKRGGQHSEIVEVIRNAMDFA
NDQLRAIADWPKEKRATEVELRAEVVKQLDDIPKLRSRDRRENDGTAPPLLDGGGATLPLLDDDNGATLPLDDDGAAPPLKDDGAASPSPLQNDGNAAPPLALQNGDGVV
LNHSY