; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0018875 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018875
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRNA-binding protein 48
Genome locationchr03:105912..110363
RNA-Seq ExpressionPI0018875
SyntenyPI0018875
Gene Ontology termsGO:0005654 - nucleoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR034264 - RBM48, RNA recognition motif
IPR035979 - RNA-binding domain superfamily
IPR039599 - RNA-binding protein 48


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142975.1 RNA-binding protein 48 isoform X2 [Cucumis sativus]3.7e-11796.46Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MP FRDE LAVRAYTVCDESRYLIVRNVPALGCGD LHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
        ESLLDTKEKLEVRRREVLARLDSGRPRG+AVSSTTAKLTN SR+HYTL+QKNS+EKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRMDNRRRI
        KIQSSSEHLQAGPASKKSRMDNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRMDNRRRI

XP_008444339.1 PREDICTED: RNA-binding protein 48 isoform X1 [Cucumis melo]7.4e-11896.02Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFH VTNARFAKRKLDEFVFLGNRLQVSYAPEF
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
        ESL+DTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSR++YTLEQKNS+E RNYGDAALIS+PHVSQ+TRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRMDNRRRI
        KIQSSSEHLQAGPASKKSR+DNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRMDNRRRI

XP_011649485.1 RNA-binding protein 48 isoform X1 [Cucumis sativus]9.0e-11696.04Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MP FRDE LAVRAYTVCDESRYLIVRNVPALGCGD LHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEK-RNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKL
        ESLLDTKEKLEVRRREVLARLDSGRPRG+AVSSTTAKLTN SR+HYTL+QKNS+EK RNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKL
Subjt:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEK-RNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKL

Query:  DKIQSSSEHLQAGPASKKSRMDNRRRI
        DKIQSSSEHLQAGPASKKSRMDNRRRI
Subjt:  DKIQSSSEHLQAGPASKKSRMDNRRRI

XP_022997621.1 RNA-binding protein 48 isoform X1 [Cucurbita maxima]3.3e-11089.82Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MPR+ +EP AVR YT+CDESRYLIVRNVPALGCGD L KLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLV+NARFAKRKLDEFVFLGNRLQVSYAP+F
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
        ESLLDTKEKLEVRRREVLARLDSGRPRGSAV+S T K TNPS +HYTLEQKNS+EKRNYGDAAL SNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRMDNRRRI
        KIQS SEHL+AGP SK+SR+DNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRMDNRRRI

XP_038884635.1 RNA-binding protein 48 isoform X1 [Benincasa hispida]4.9e-11493.81Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MPRF DEP AVR YTVCDESRYL+VRNVPALGCGD L KLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVT+ARFAKRKLDEFVFLGNRLQVSYAPEF
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
        ESLLDT+EKLEVRRREVLARLDSGRPRGSAVSSTTAK TNPSR+HYTLEQKNS+E RNYGD  LISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRMDNRRRI
        KIQSSSEHLQAGPASKKSRMDNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRMDNRRRI

TrEMBL top hitse value%identityAlignment
A0A0A0LQL2 RNA-binding protein 481.8e-11796.46Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MP FRDE LAVRAYTVCDESRYLIVRNVPALGCGD LHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
        ESLLDTKEKLEVRRREVLARLDSGRPRG+AVSSTTAKLTN SR+HYTL+QKNS+EKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRMDNRRRI
        KIQSSSEHLQAGPASKKSRMDNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRMDNRRRI

A0A1S3BA34 RNA-binding protein 483.6e-11896.02Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFH VTNARFAKRKLDEFVFLGNRLQVSYAPEF
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
        ESL+DTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSR++YTLEQKNS+E RNYGDAALIS+PHVSQ+TRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRMDNRRRI
        KIQSSSEHLQAGPASKKSR+DNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRMDNRRRI

A0A5A7V5K4 RNA-binding protein 483.6e-11896.02Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFH VTNARFAKRKLDEFVFLGNRLQVSYAPEF
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
        ESL+DTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSR++YTLEQKNS+E RNYGDAALIS+PHVSQ+TRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRMDNRRRI
        KIQSSSEHLQAGPASKKSR+DNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRMDNRRRI

A0A6J1HAQ6 RNA-binding protein 482.3e-10988.94Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MPR+ +EP AVR YT+CDESRYLIVRNVPALGCGD L KLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLV+NARFAKRKLDEFVFLGNRLQVSYAP+F
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
        ESLLDTKEKLEVRRREVLARL+SGRPRGSAV+S T K TNPS +HYTLEQK+S+EKRNYGDAAL SNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRMDNRRRI
        KIQS SEHL+AGP SK+SR+DNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRMDNRRRI

A0A6J1K7Z4 RNA-binding protein 481.6e-11089.82Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        MPR+ +EP AVR YT+CDESRYLIVRNVPALGCGD L KLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLV+NARFAKRKLDEFVFLGNRLQVSYAP+F
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
        ESLLDTKEKLEVRRREVLARLDSGRPRGSAV+S T K TNPS +HYTLEQKNS+EKRNYGDAAL SNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD
Subjt:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLD

Query:  KIQSSSEHLQAGPASKKSRMDNRRRI
        KIQS SEHL+AGP SK+SR+DNRRRI
Subjt:  KIQSSSEHLQAGPASKKSRMDNRRRI

SwissProt top hitse value%identityAlignment
A4FVJ7 RNA-binding protein 482.2e-2437.78Show/hide
Query:  PRFRD--EPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPE
        P++R+     AV+ YT+  ESRYL+V+ VPA+G    L +LF+ YG +EE +P+D    ++FT+VY ++F  +T+AR AKR  DE  F G +L V YAPE
Subjt:  PRFRD--EPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPE

Query:  FESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSD
        +E++ +TK+KL+ RRR V           +  S   AKL +  +A    E  +S + R      +  NP  ++   V+SD
Subjt:  FESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSD

Q561R3 RNA-binding protein 481.9e-2043.93Show/hide
Query:  PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTK
        P AV+ YT+  ES+YL+++ VPA+G    L + F+ YG +E+   +D    ++FT+VY +KF  + +AR AK+K+DE  F G  L V YAPEFE++ +T+
Subjt:  PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTK

Query:  EKLEVRR
        +KLE R+
Subjt:  EKLEVRR

Q5R4U2 RNA-binding protein 483.0e-2144.14Show/hide
Query:  PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTK
        P AV+ YT+  ES+YL+++ VPA+G    L + F+ YG +E+   +D    ++FT+VY +KF  + +AR AKRK+DE  F G  L V YAPEFE++ +T+
Subjt:  PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTK

Query:  EKLEVRRREVL
        +KL+VR+  V+
Subjt:  EKLEVRRREVL

Q5RL73 RNA-binding protein 481.1e-2043.24Show/hide
Query:  PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTK
        P AV+ YT+  ES+YL+++ VPA+G    L + F+ YG +E+   +D    ++FT+VY +KF  + +AR AKRK+DE  F G  L V YAPEFE++ +T+
Subjt:  PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTK

Query:  EKLEVRRREVL
        +KL++R+  V+
Subjt:  EKLEVRRREVL

Q8K2X2 RNA-binding protein 485.6e-2042.99Show/hide
Query:  PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTK
        P AV+ YT+  ES+YL+++ VPA+G    L + F+ YG +E+   +D    ++FT+VY +KF  + +AR AK+K+DE  F G  L V YAPEFE++ +T+
Subjt:  PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTK

Query:  EKLEVRR
        +KL+ R+
Subjt:  EKLEVRR

Arabidopsis top hitse value%identityAlignment
AT2G27790.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.5e-6353.39Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        M R++DE  AVR YTVCDESRY+IVRNVPALGCGD L +LF +YG +EECKPMDAE+C EFTDVY++KF L+TNARFAKRKLDE  FLGNRLQ+SYAPE+
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNP--SRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREK
        E++ DTK+KLE RR+EVLARL+   P+    +S   KL  P  ++      Q+  +E + +   A         +TRVSSDQ+YFAS SMNQTV  VREK
Subjt:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNP--SRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREK

Query:  LDKIQSSSEHLQAGPAS-----------------------KKSRMDNRRRI
        L+KI+ S    +  P+S                       K++R+DNRRRI
Subjt:  LDKIQSSSEHLQAGPAS-----------------------KKSRMDNRRRI

AT2G27790.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.5e-6353.39Show/hide
Query:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF
        M R++DE  AVR YTVCDESRY+IVRNVPALGCGD L +LF +YG +EECKPMDAE+C EFTDVY++KF L+TNARFAKRKLDE  FLGNRLQ+SYAPE+
Subjt:  MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEF

Query:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNP--SRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREK
        E++ DTK+KLE RR+EVLARL+   P+    +S   KL  P  ++      Q+  +E + +   A         +TRVSSDQ+YFAS SMNQTV  VREK
Subjt:  ESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNP--SRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREK

Query:  LDKIQSSSEHLQAGPAS-----------------------KKSRMDNRRRI
        L+KI+ S    +  P+S                       K++R+DNRRRI
Subjt:  LDKIQSSSEHLQAGPAS-----------------------KKSRMDNRRRI

AT5G27300.1 pentatricopeptide (PPR) repeat-containing protein3.2e-5555.5Show/hide
Query:  TVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRR
        +VCDESRY+IVRNVPALGCGD L +LF +YG +EECKPMDAE+C EFTDVY++KF L+TNA    RKLDE  FLGNRLQ+SYAPE+ES+ DTKEKLE RR
Subjt:  TVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRR

Query:  REVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPA
        +EVLARL+   P  +  +S   KL  P+     L Q ++   R   +     +   + +TRVSS Q+YFAS SMNQ V  VREKL+KI+ S    +  P+
Subjt:  REVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPA

Query:  S------KKSRMDNRRRI
        S      K++R+DNRRRI
Subjt:  S------KKSRMDNRRRI

AT5G27300.2 pentatricopeptide (PPR) repeat-containing protein3.2e-5555.5Show/hide
Query:  TVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRR
        +VCDESRY+IVRNVPALGCGD L +LF +YG +EECKPMDAE+C EFTDVY++KF L+TNA    RKLDE  FLGNRLQ+SYAPE+ES+ DTKEKLE RR
Subjt:  TVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRR

Query:  REVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPA
        +EVLARL+   P  +  +S   KL  P+     L Q ++   R   +     +   + +TRVSS Q+YFAS SMNQ V  VREKL+KI+ S    +  P+
Subjt:  REVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPA

Query:  S------KKSRMDNRRRI
        S      K++R+DNRRRI
Subjt:  S------KKSRMDNRRRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGTTTTAGAGACGAGCCCCTTGCGGTTCGCGCCTATACAGTTTGCGATGAGTCAAGGTATTTGATTGTGAGGAACGTTCCGGCATTGGGTTGTGGAGATGGCTT
GCACAAACTGTTCTCCTCCTACGGGAACCTTGAAGAGTGTAAACCCATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTCAAATTTCATTTGGTCACCA
ATGCCAGGTTTGCAAAAAGAAAATTGGACGAGTTTGTTTTCCTTGGTAATCGGCTCCAAGTCTCTTATGCGCCTGAGTTTGAAAGCTTGCTTGATACAAAGGAGAAGCTA
GAAGTTAGGAGACGAGAAGTTTTAGCACGATTGGATTCTGGCAGACCAAGAGGATCTGCAGTTAGTTCAACAACCGCAAAGCTTACAAATCCTTCTCGCGCTCATTATAC
TCTTGAACAGAAGAACTCTATTGAAAAGAGGAATTATGGAGACGCAGCACTCATTTCCAATCCCCATGTTTCTCAAATAACAAGAGTTTCCTCTGACCAGGATTACTTCG
CATCTGAATCTATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAAGCAGCGAACATCTGCAAGCTGGACCCGCGAGCAAGAAATCACGTATG
GACAATAGGAGGAGAATCTAA
mRNA sequenceShow/hide mRNA sequence
ATTGGTTGCAACCCAAGCGTTTGTTTATAATTATGAAATTTTTTGTGTAGGTGCCGCAAATTCCACCTTTATCCATGGATCCCTTGTTCCTTCAATTTGAAACTCATTTT
CCTGCTAAATCATGACAAAAATCCCAGGGAACGATCGGGAGAAGCATCTCGAGTTTGGACGCCGTAGCCTCAAGCAAAACATCTGATCTGAATTTGACGACAAATCCGAC
CCACAGGTCTAAAGGAGTTCCACGATCACAGCAGGATGCTATGTTCTCAATTTGTGAGTGAAACAACTAAAGTGCAACAACGACTGCAACTTAGAAAAAGGACGCTCAAT
CGGGAAGGCATTCAAGGGCATTCGAATCAGTTGAGGGTTTTGCCGGAACTCTCGTGTGCTTAATTTGTGATTGTGCCAATCGAGAAACAGGGCGGAGTTTGATTCGATAA
CTTGAAATCGGAAATCGGAAATCGAAATTGGGAGAAGACGGGTTGTTGGGGGATGCCTCGTTTTAGAGACGAGCCCCTTGCGGTTCGCGCCTATACAGTTTGCGATGAGT
CAAGGTATTTGATTGTGAGGAACGTTCCGGCATTGGGTTGTGGAGATGGCTTGCACAAACTGTTCTCCTCCTACGGGAACCTTGAAGAGTGTAAACCCATGGATGCAGAA
GAATGTGATGAATTCACAGACGTTTATTTTGTCAAATTTCATTTGGTCACCAATGCCAGGTTTGCAAAAAGAAAATTGGACGAGTTTGTTTTCCTTGGTAATCGGCTCCA
AGTCTCTTATGCGCCTGAGTTTGAAAGCTTGCTTGATACAAAGGAGAAGCTAGAAGTTAGGAGACGAGAAGTTTTAGCACGATTGGATTCTGGCAGACCAAGAGGATCTG
CAGTTAGTTCAACAACCGCAAAGCTTACAAATCCTTCTCGCGCTCATTATACTCTTGAACAGAAGAACTCTATTGAAAAGAGGAATTATGGAGACGCAGCACTCATTTCC
AATCCCCATGTTTCTCAAATAACAAGAGTTTCCTCTGACCAGGATTACTTCGCATCTGAATCTATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGATTCA
ATCAAGCAGCGAACATCTGCAAGCTGGACCCGCGAGCAAGAAATCACGTATGGACAATAGGAGGAGAATCTAATGCTTGCCGACCTCTTTATAGAGACGGTTAATAGGTG
TCTCAACGTTGTATCAAAGGCTATTTTGACATGTCGCATATACTTAGATTTGCAGTGTAGAAATTAAACTGTTTGACCTTTTATTTCAAAGGTGAAAAAGTAATAGTGCA
TGCAACAAAGTTCTGTAGAGGAGTGTTTTATTGTCATCACTATAGCACGTATTGCATCAGTTCTCACACGAAGATCGTTATTGTAGATTTATAGTATACATTTGTAATTA
CTTTTTTTAGTATACGTAACGATTGTGTAAAGAAATATTAGACCAAAATTTCGTACGACTTATTAATTACTCCGGGAAGATGGA
Protein sequenceShow/hide protein sequence
MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKL
EVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRAHYTLEQKNSIEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRM
DNRRRI