CuGenDBv2

Gene ID	PI0018896
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Pol protein
Genome location	chr03:15469565..15469804
RNA-Seq Expression	PI0018896
Synteny	PI0018896
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR016197 - Chromo-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0043507.1 pol protein [Cucumis melo var. makuwa]

8.2e-32

87.34

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Query:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFED
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LAREVKTLRNKEIPLVKVLWRNHR+EEATWEREDDMR+ +PELFE+
Subjt:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFED

KAA0046636.1 pol protein [Cucumis melo var. makuwa]

8.2e-32

87.34

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Query:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFED
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LAREVKTLRNKEIPLVKVLWRNHR+EEATWEREDDMR+ +PELFE+
Subjt:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFED

KAA0053953.1 pol protein [Cucumis melo var. makuwa]

8.2e-32

87.34

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Query:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFED
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LAREVKTLRNKEIPLVKVLWRNHR+EEATWEREDDMR+ +PELFE+
Subjt:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFED

KAA0062529.1 pol protein [Cucumis melo var. makuwa]

6.3e-32

88.46

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Query:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFE
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LAREVKTLRNKEIPLVKVLWRNHR+EEATWEREDDMR+ +PELFE
Subjt:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFE

KAA0063117.1 pol protein [Cucumis melo var. makuwa]

8.2e-32

87.34

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Query:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFED
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LAREVKTLRNKEIPLVKVLWRNHR+EEATWEREDDMR+ +PELFE+
Subjt:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFED

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TQM9 Pol protein

4.0e-32

87.34

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Query:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFED
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LAREVKTLRNKEIPLVKVLWRNHR+EEATWEREDDMR+ +PELFE+
Subjt:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFED

A0A5A7UAA8 Reverse transcriptase

4.0e-32

87.34

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Query:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFED
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LAREVKTLRNKEIPLVKVLWRNHR+EEATWEREDDMR+ +PELFE+
Subjt:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFED

A0A5A7V8Y0 Pol protein

4.0e-32

87.34

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Query:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFED
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LAREVKTLRNKEIPLVKVLWRNHR+EEATWEREDDMR+ +PELFE+
Subjt:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFED

A0A5A7VA30 Pol protein

3.0e-32

88.46

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Query:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFE
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LAREVKTLRNKEIPLVKVLWRNHR+EEATWEREDDMR+ +PELFE
Subjt:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFE

A0A5A7VRK1 Pol protein

4.0e-32

87.34

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Query:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFED
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LAREVKTLRNKEIPLVKVLWRNHR+EEATWEREDDMR+ +PELFE+
Subjt:  MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFED

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCTGAGAAAATACGTGACTGACCCATCTCATGTTTTGGACTATGAACCTTTGGCCATTGATGAGAATTTGAGTTACGTTGAGCATCCAGTTGAGATCTTGGCCAGAGA
GGTTAAGACGCTTCGTAACAAAGAGATTCCGTTAGTGAAGGTTCTTTGGCGCAACCACCGAATGGAAGAAGCCACTTGGGAGCGAGAGGATGACATGAGAGCTAATCATC
CAGAGTTATTCGAAGATTAG

mRNA sequence

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Protein sequence

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MLRKYVTDPSHVLDYEPLAIDENLSYVEHPVEILAREVKTLRNKEIPLVKVLWRNHRMEEATWEREDDMRANHPELFED

PI0018896 (gene) of Melon (PI 482460) v1 genome