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PI0018901 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018901
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr08:13376719..13377958
RNA-Seq ExpressionPI0018901
SyntenyPI0018901
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-4066.91Show/hide
Query:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLEAKAT--RTSNYERGNSSTGSVAHIEERI
        MS+    GKA  DRLV++EEQMLYL+E  D++R+LE R+EEISEK + IDAV GR++G PI+EL+ RV  LE      RT NYERG+SSTGSVAHIEER+
Subjt:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLEAKAT--RTSNYERGNSSTGSVAHIEERI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARM
         ELDSSQK+++EMIN MSEDFRA LDVVRNEIADV+AR+
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARM

KAA0037518.1 uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa]1.6e-4066.91Show/hide
Query:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLE--AKATRTSNYERGNSSTGSVAHIEERI
        MS+    GKA  DRLV+IEEQMLYL+E  D++R+LE R+EEISEKAD IDAV GR++GLPI+ELL RV  LE    A RT NYERG SS+G  AH+EER+
Subjt:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLE--AKATRTSNYERGNSSTGSVAHIEERI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARM
        GELD++QK+++EMIN MSEDFR  LDVVRNEIADV+AR+
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARM

KAA0062476.1 uncharacterized protein E6C27_scaffold130G00660 [Cucumis melo var. makuwa]4.9e-4271.97Show/hide
Query:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLEAKATRTSNYERGNSSTGSVAHIEERIGE
        MST KQ+GK   DRLV+++EQM YL+E SD++ FL+ R+EEI EKADAIDAVT RLDGLPI+ELL RV TLE K  RT NYE G+SST  V+HIEER+ E
Subjt:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLEAKATRTSNYERGNSSTGSVAHIEERIGE

Query:  LDSSQKSIVEMINDMSEDFRAALDVVRNEIAD
        LDSSQKSI+EMIN MS+DFRA LDVVRNEIAD
Subjt:  LDSSQKSIVEMINDMSEDFRAALDVVRNEIAD

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-4066.91Show/hide
Query:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLEAKAT--RTSNYERGNSSTGSVAHIEERI
        MS+    GKA  DRLV++EEQMLYL+E  D++R+LE R+EEISEK + IDAV GR++G PI+EL+ RV  LE      RT NYERG+SSTGSVAHIEER+
Subjt:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLEAKAT--RTSNYERGNSSTGSVAHIEERI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARM
         ELDSSQK+++EMIN MSEDFRA LDVVRNEIADV+AR+
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARM

TYK03099.1 reverse transcriptase [Cucumis melo var. makuwa]9.3e-4166.91Show/hide
Query:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLEAKAT--RTSNYERGNSSTGSVAHIEERI
        MS+   +GKA  DRLV++EEQMLYL+E  D++R+LE R+EEISEK + IDAV GR++G PI+EL+ RV  LE      RT NYERG+SSTGSVAHIEER+
Subjt:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLEAKAT--RTSNYERGNSSTGSVAHIEERI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARM
         ELDSSQK+++EMIN MSEDFRA LDVVRNEIADV+AR+
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARM

TrEMBL top hitse value%identityAlignment
A0A5D3BQN3 Retrotrans_gag domain-containing protein7.6e-4166.91Show/hide
Query:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLE--AKATRTSNYERGNSSTGSVAHIEERI
        MS+    GKA  DRLV+IEEQMLYL+E  D++R+LE R+EEISEKAD IDAV GR++GLPI+ELL RV  LE    A RT NYERG SS+G  AH+EER+
Subjt:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLE--AKATRTSNYERGNSSTGSVAHIEERI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARM
        GELD++QK+++EMIN MSEDFR  LDVVRNEIADV+AR+
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARM

A0A5D3BRZ6 Reverse transcriptase1.0e-4066.91Show/hide
Query:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLEAKAT--RTSNYERGNSSTGSVAHIEERI
        MS+    GKA  DRLV++EEQMLYL+E  D++R+LE R+EEISEK + IDAV GR++G PI+EL+ RV  LE      RT NYERG+SSTGSVAHIEER+
Subjt:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLEAKAT--RTSNYERGNSSTGSVAHIEERI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARM
         ELDSSQK+++EMIN MSEDFRA LDVVRNEIADV+AR+
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARM

A0A5D3BYE6 Reverse transcriptase4.5e-4166.91Show/hide
Query:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLEAKAT--RTSNYERGNSSTGSVAHIEERI
        MS+   +GKA  DRLV++EEQMLYL+E  D++R+LE R+EEISEK + IDAV GR++G PI+EL+ RV  LE      RT NYERG+SSTGSVAHIEER+
Subjt:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLEAKAT--RTSNYERGNSSTGSVAHIEERI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARM
         ELDSSQK+++EMIN MSEDFRA LDVVRNEIADV+AR+
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARM

A0A5D3C4R1 Reverse transcriptase1.0e-4066.91Show/hide
Query:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLEAKAT--RTSNYERGNSSTGSVAHIEERI
        MS+    GKA  DRLV++EEQMLYL+E  D++R+LE R+EEISEK + IDAV GR++G PI+EL+ RV  LE      RT NYERG+SSTGSVAHIEER+
Subjt:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLEAKAT--RTSNYERGNSSTGSVAHIEERI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARM
         ELDSSQK+++EMIN MSEDFRA LDVVRNEIADV+AR+
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARM

A0A5D3DUL1 Uncharacterized protein2.4e-4271.97Show/hide
Query:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLEAKATRTSNYERGNSSTGSVAHIEERIGE
        MST KQ+GK   DRLV+++EQM YL+E SD++ FL+ R+EEI EKADAIDAVT RLDGLPI+ELL RV TLE K  RT NYE G+SST  V+HIEER+ E
Subjt:  MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLEAKATRTSNYERGNSSTGSVAHIEERIGE

Query:  LDSSQKSIVEMINDMSEDFRAALDVVRNEIAD
        LDSSQKSI+EMIN MS+DFRA LDVVRNEIAD
Subjt:  LDSSQKSIVEMINDMSEDFRAALDVVRNEIAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACAGTGAAACAGATGGGCAAGGCCCACGTAGACCGATTGGTAAAGATCGAAGAGCAGATGCTCTACCTGTTGGAATTTTCGGACACCGTTCGCTTCTTAGAAGG
TCGGATTGAAGAAATTTCCGAGAAAGCGGACGCTATTGATGCGGTGACTGGTCGCCTCGACGGTTTACCTATAAAGGAGTTGTTGATAAGGGTTGGCACTCTAGAGGCAA
AGGCTACAAGAACTAGTAACTACGAGCGTGGGAACAGTTCAACGGGCTCTGTTGCCCACATAGAGGAACGGATTGGCGAGCTAGATAGCTCCCAAAAGTCGATTGTCGAG
ATGATAAACGACATGTCAGAAGATTTTCGTGCCGCTCTTGATGTCGTCAGGAATGAGATCGCAGACGTGAGCGCGAGGATGAGAGACGTCATCCAAGTCCCTCACCCGAA
AGAAATGAGAACGATCGTGCAAGTTCTCCAAAGGCCGGAGGGGGAGATAAATGATCTAGTGGTGATCGTAAGCCCTTCCAATCAAACCCCGGGAGCCCGGGGCGAGGACA
GAACCACCAGAATTCTCGCAGTCGTCCCCCTGCCTGTTTCATATGTAAAGGGTCGCATGTGGCGAGAGAATGCCCGAATGGGACCGCCTTCTACGCCTTTCAGGCTGCCT
TAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTACAGTGAAACAGATGGGCAAGGCCCACGTAGACCGATTGGTAAAGATCGAAGAGCAGATGCTCTACCTGTTGGAATTTTCGGACACCGTTCGCTTCTTAGAAGG
TCGGATTGAAGAAATTTCCGAGAAAGCGGACGCTATTGATGCGGTGACTGGTCGCCTCGACGGTTTACCTATAAAGGAGTTGTTGATAAGGGTTGGCACTCTAGAGGCAA
AGGCTACAAGAACTAGTAACTACGAGCGTGGGAACAGTTCAACGGGCTCTGTTGCCCACATAGAGGAACGGATTGGCGAGCTAGATAGCTCCCAAAAGTCGATTGTCGAG
ATGATAAACGACATGTCAGAAGATTTTCGTGCCGCTCTTGATGTCGTCAGGAATGAGATCGCAGACGTGAGCGCGAGGATGAGAGACGTCATCCAAGTCCCTCACCCGAA
AGAAATGAGAACGATCGTGCAAGTTCTCCAAAGGCCGGAGGGGGAGATAAATGATCTAGTGGTGATCGTAAGCCCTTCCAATCAAACCCCGGGAGCCCGGGGCGAGGACA
GAACCACCAGAATTCTCGCAGTCGTCCCCCTGCCTGTTTCATATGTAAAGGGTCGCATGTGGCGAGAGAATGCCCGAATGGGACCGCCTTCTACGCCTTTCAGGCTGCCT
TAG
Protein sequenceShow/hide protein sequence
MSTVKQMGKAHVDRLVKIEEQMLYLLEFSDTVRFLEGRIEEISEKADAIDAVTGRLDGLPIKELLIRVGTLEAKATRTSNYERGNSSTGSVAHIEERIGELDSSQKSIVE
MINDMSEDFRAALDVVRNEIADVSARMRDVIQVPHPKEMRTIVQVLQRPEGEINDLVVIVSPSNQTPGARGEDRTTRILAVVPLPVSYVKGRMWRENARMGPPSTPFRLP