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PI0018947 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0018947
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr10:235410..235778
RNA-Seq ExpressionPI0018947
SyntenyPI0018947
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025766.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.1e-4372.95Show/hide
Query:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN
        VAYRL+LP E  IHNVFH+SQLK KLG++H +Q   PKLT  FELQLWPETVLGI W+ ELGANEWLVKWK LPDSEATWESVY MNQQFP FHLEDKV 
Subjt:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN

Query:  LEPQGIVR-PLLFINTKEGAKG
        LEP+GIVR P++ +  ++G KG
Subjt:  LEPQGIVR-PLLFINTKEGAKG

KAA0046359.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.2e-4372.95Show/hide
Query:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN
        VAYRL+LP E  IHNVFH+SQLK KLG +H VQ   P+LT  FELQLWPETVLGI W+ ELGANEWLVKWK LPDSEATWESVY MNQQFP FHLEDKV 
Subjt:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN

Query:  LEPQGIVR-PLLFINTKEGAKG
        LEP+GIVR P++ +  + G KG
Subjt:  LEPQGIVR-PLLFINTKEGAKG

TYJ96663.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-4372.95Show/hide
Query:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN
        VAYRL+LP E  IHNVFH+SQLK KLG +H VQ   P+LT  FELQLWPETVLGI W+ ELGANEWLVKWK LPDSEATWESVY MNQQFP FHLEDKV+
Subjt:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN

Query:  LEPQGIVR-PLLFINTKEGAKG
        LEP+GIVR P++ +  + G KG
Subjt:  LEPQGIVR-PLLFINTKEGAKG

TYK05441.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.5e-4372.95Show/hide
Query:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN
        VAYRL+LP E  IHNVFH+SQLK KLG +H VQ   P+LT  FELQLWPETVLGI W+ ELGANEWLVKWK LPDSEATWESVY MNQQFP FHLEDKV 
Subjt:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN

Query:  LEPQGIVR-PLLFINTKEGAKG
        LEP+GIVR P++ +  ++G KG
Subjt:  LEPQGIVR-PLLFINTKEGAKG

TYK23222.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]3.8e-4473.77Show/hide
Query:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN
        VAYRL+LP E  IHNVFH+SQLK KLG++H +Q   PKLT  FELQLWPETVLGI W+ ELGANEWLVKWK LPDSEATWESVY MNQQFP FHLEDKV 
Subjt:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN

Query:  LEPQGIVR-PLLFINTKEGAKG
        LEPQGIVR P++ +  ++G KG
Subjt:  LEPQGIVR-PLLFINTKEGAKG

TrEMBL top hitse value%identityAlignment
A0A5A7SIW4 Retrotransposable element Tf25.3e-4472.95Show/hide
Query:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN
        VAYRL+LP E  IHNVFH+SQLK KLG++H +Q   PKLT  FELQLWPETVLGI W+ ELGANEWLVKWK LPDSEATWESVY MNQQFP FHLEDKV 
Subjt:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN

Query:  LEPQGIVR-PLLFINTKEGAKG
        LEP+GIVR P++ +  ++G KG
Subjt:  LEPQGIVR-PLLFINTKEGAKG

A0A5A7VK94 Ty3/gypsy retrotransposon protein1.6e-4372.95Show/hide
Query:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN
        VAYRL+LP E  IHNVFH+SQLK KLG +H VQ   P+LT  FELQLWPETVLGI W+ ELGANEWLVKWK LPDSEATWESVY MNQQFP FHLEDKV 
Subjt:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN

Query:  LEPQGIVR-PLLFINTKEGAKG
        LEP+GIVR P++ +  + G KG
Subjt:  LEPQGIVR-PLLFINTKEGAKG

A0A5D3BBH7 Ty3/gypsy retrotransposon protein9.1e-4472.95Show/hide
Query:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN
        VAYRL+LP E  IHNVFH+SQLK KLG +H VQ   P+LT  FELQLWPETVLGI W+ ELGANEWLVKWK LPDSEATWESVY MNQQFP FHLEDKV+
Subjt:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN

Query:  LEPQGIVR-PLLFINTKEGAKG
        LEP+GIVR P++ +  + G KG
Subjt:  LEPQGIVR-PLLFINTKEGAKG

A0A5D3C0K0 Transposon Ty3-G Gag-Pol polyprotein1.2e-4372.95Show/hide
Query:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN
        VAYRL+LP E  IHNVFH+SQLK KLG +H VQ   P+LT  FELQLWPETVLGI W+ ELGANEWLVKWK LPDSEATWESVY MNQQFP FHLEDKV 
Subjt:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN

Query:  LEPQGIVR-PLLFINTKEGAKG
        LEP+GIVR P++ +  ++G KG
Subjt:  LEPQGIVR-PLLFINTKEGAKG

A0A5D3DI23 Transposon Ty3-G Gag-Pol polyprotein1.8e-4473.77Show/hide
Query:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN
        VAYRL+LP E  IHNVFH+SQLK KLG++H +Q   PKLT  FELQLWPETVLGI W+ ELGANEWLVKWK LPDSEATWESVY MNQQFP FHLEDKV 
Subjt:  VAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVN

Query:  LEPQGIVR-PLLFINTKEGAKG
        LEPQGIVR P++ +  ++G KG
Subjt:  LEPQGIVR-PLLFINTKEGAKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGCTTATCGGTTGAACCTTCCTCAAGAGGTAGTAATACATAATGTCTTCCATGTCTCACAACTCAAACGCAAATTAGGGCAGAAACATCAGGTTCAACAGATTCC
TCCTAAGCTGACTAAAGGTTTTGAATTACAGTTATGGCCAGAAACAGTTTTAGGCATCTGTTGGAACACAGAGTTAGGAGCGAATGAATGGCTTGTGAAGTGGAAGCACC
TACCAGACAGTGAAGCTACGTGGGAGTCTGTCTACCAAATGAACCAACAGTTTCCTGATTTTCACCTTGAGGACAAGGTGAATTTGGAACCCCAGGGTATTGTTAGACCC
CTGTTATTCATAAATACAAAAGAAGGGGCAAAAGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGCTTATCGGTTGAACCTTCCTCAAGAGGTAGTAATACATAATGTCTTCCATGTCTCACAACTCAAACGCAAATTAGGGCAGAAACATCAGGTTCAACAGATTCC
TCCTAAGCTGACTAAAGGTTTTGAATTACAGTTATGGCCAGAAACAGTTTTAGGCATCTGTTGGAACACAGAGTTAGGAGCGAATGAATGGCTTGTGAAGTGGAAGCACC
TACCAGACAGTGAAGCTACGTGGGAGTCTGTCTACCAAATGAACCAACAGTTTCCTGATTTTCACCTTGAGGACAAGGTGAATTTGGAACCCCAGGGTATTGTTAGACCC
CTGTTATTCATAAATACAAAAGAAGGGGCAAAAGGGTAA
Protein sequenceShow/hide protein sequence
MVAYRLNLPQEVVIHNVFHVSQLKRKLGQKHQVQQIPPKLTKGFELQLWPETVLGICWNTELGANEWLVKWKHLPDSEATWESVYQMNQQFPDFHLEDKVNLEPQGIVRP
LLFINTKEGAKG