CuGenDBv2

Gene ID	PI0018960
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr08:6448293..6452805
RNA-Seq Expression	PI0018960
Synteny	PI0018960
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-65

89.54

Show/hide

Query:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN
        MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLN
Subjt:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN

Query:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG
        ELQTF+SLMKIKGQKGE NVATS RKF+RGST  TK +PSS   KKWKKKKGG
Subjt:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-65

89.54

Show/hide

Query:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN
        MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLN
Subjt:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN

Query:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG
        ELQTF+SLMKIKGQKGE NVATS RKF+RGST  TK +PSS   KKWKKKKGG
Subjt:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-65

89.54

Show/hide

Query:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN
        MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLN
Subjt:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN

Query:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG
        ELQTF+SLMKIKGQKGE NVATS RKF+RGST  TK +PSS   KKWKKKKGG
Subjt:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-65

89.54

Show/hide

Query:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN
        MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLN
Subjt:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN

Query:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG
        ELQTF+SLMKIKGQKGE NVATS RKF+RGST  TK +PSS   KKWKKKKGG
Subjt:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-65

89.54

Show/hide

Query:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN
        MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLN
Subjt:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN

Query:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG
        ELQTF+SLMKIKGQKGE NVATS RKF+RGST  TK +PSS   KKWKKKKGG
Subjt:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

7.9e-66

89.54

Show/hide

Query:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN
        MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLN
Subjt:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN

Query:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG
        ELQTF+SLMKIKGQKGE NVATS RKF+RGST  TK +PSS   KKWKKKKGG
Subjt:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG

A0A5A7TU93 Gag/pol protein

7.9e-66

89.54

Show/hide

Query:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN
        MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLN
Subjt:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN

Query:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG
        ELQTF+SLMKIKGQKGE NVATS RKF+RGST  TK +PSS   KKWKKKKGG
Subjt:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG

A0A5A7TWB9 Gag/pol protein

7.9e-66

89.54

Show/hide

Query:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN
        MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLN
Subjt:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN

Query:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG
        ELQTF+SLMKIKGQKGE NVATS RKF+RGST  TK +PSS   KKWKKKKGG
Subjt:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG

A0A5A7V4M1 Gag/pol protein

7.9e-66

89.54

Show/hide

Query:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN
        MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLN
Subjt:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN

Query:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG
        ELQTF+SLMKIKGQKGE NVATS RKF+RGST  TK +PSS   KKWKKKKGG
Subjt:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG

A0A5D3CPJ6 Gag/pol protein

7.9e-66

89.54

Show/hide

Query:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN
        MLTAREIMDSLQEMFGQASYQIKHD LKYIYNARMNEGASVREHVLNMMVHFNVAEMN  VIDEASQVSF LESLPESFLQFRSN VMNKIAYTLTTLLN
Subjt:  MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLN

Query:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG
        ELQTF+SLMKIKGQKGE NVATS RKF+RGST  TK +PSS   KKWKKKKGG
Subjt:  ELQTFKSLMKIKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCTCACTGCTCGAGAGATCATGGACTCCTTGCAAGAGATGTTTGGTCAGGCCTCTTATCAGATCAAGCATGATACTCTGAAATACATTTATAATGCTCGTATGAATGA
GGGAGCTTCAGTGCGAGAACATGTTCTCAATATGATGGTTCATTTCAACGTGGCAGAAATGAACGAGGTCGTCATCGATGAAGCCAGTCAGGTTAGCTTTAGTTTGGAAT
CTCTCCCAGAGAGTTTCCTACAATTTAGAAGCAATGTTGTTATGAACAAGATTGCTTATACCCTAACCACCCTTCTAAACGAGCTACAGACTTTCAAGTCTCTGATGAAA
ATCAAGGGGCAGAAAGGAGAGACAAATGTTGCTACTTCCATAAGAAAGTTCTATAGAGGTTCGACCTTTAGAACTAAGTTTGTGCCTTCTTCATTTAGCACTAAGAAGTG
GAAGAAGAAGAAAGGCGGTCCTTTGATTTGCATGGGTGAGAGTGGCTTTCGTCGTCGATTCAATATGCCTACCACTTTGGGGATTCGTCTGATTGGGGAGCTGGGAACAC
AGCTATACAAGAAGGATTCACTCCTTCTCTATAGATAG

mRNA sequence

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Protein sequence

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MLTAREIMDSLQEMFGQASYQIKHDTLKYIYNARMNEGASVREHVLNMMVHFNVAEMNEVVIDEASQVSFSLESLPESFLQFRSNVVMNKIAYTLTTLLNELQTFKSLMK
IKGQKGETNVATSIRKFYRGSTFRTKFVPSSFSTKKWKKKKGGPLICMGESGFRRRFNMPTTLGIRLIGELGTQLYKKDSLLLYR

PI0018960 (gene) of Melon (PI 482460) v1 genome