CuGenDBv2

Gene ID	PI0018972
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	60S ribosomal protein L12
Genome location	chr08:16692094..16692592
RNA-Seq Expression	PI0018972
Synteny	PI0018972
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070180 - large ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000911 - Ribosomal protein L11/L12 IPR020784 - Ribosomal protein L11, N-terminal IPR020785 - Ribosomal protein L11, conserved site IPR036769 - Ribosomal protein L11, C-terminal domain superfamily IPR036796 - Ribosomal protein L11/L12, N-terminal domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004137822.1 60S ribosomal protein L12-1 [Cucumis sativus]

5.0e-64

83.73

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Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV          ALKEPERDRKKTKNIK
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        HNGNISLDDVIEIAR                EILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Subjt:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

XP_004143249.1 60S ribosomal protein L12-1 [Cucumis sativus]

1.7e-64

84.34

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Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV          ALKEPERDRKKTKNIK
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        HNGNISLDDVIEIAR                EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Subjt:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

XP_022143990.1 60S ribosomal protein L12-like [Momordica charantia]

1.1e-63

83.13

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Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV          ALKEPERDRKKTKNIK
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        HNGNISLDDVIEIAR                EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Subjt:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

XP_022935531.1 60S ribosomal protein L12-1-like [Cucurbita moschata]

3.2e-63

82.53

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Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV          ALKEPERDRKKTKNIK
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        HNGNISLDDVIEIAR                EILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Subjt:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

XP_038883892.1 60S ribosomal protein L12-1-like [Benincasa hispida]

1.1e-63

83.13

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Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV          ALKEPERDRKKTKNIK
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        HNGNISLDDVIEIAR                EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Subjt:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KF33 Uncharacterized protein

8.2e-65

84.34

Show/hide

Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV          ALKEPERDRKKTKNIK
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        HNGNISLDDVIEIAR                EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Subjt:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

A0A0A0LAX8 Uncharacterized protein

2.4e-64

83.73

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Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV          ALKEPERDRKKTKNIK
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        HNGNISLDDVIEIAR                EILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Subjt:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

A0A1S3BLM0 60S ribosomal protein L12-1

8.2e-65

84.34

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Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV          ALKEPERDRKKTKNIK
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        HNGNISLDDVIEIAR                EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Subjt:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

A0A4D8ZR95 Large subunit ribosomal protein L12e

1.1e-64

88.67

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Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        M PKLDPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV+V          ALKEPERDRKKTKNIK
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIAREILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        HNGNISLDDVIEIA+EILGTCVSVGCTVDGKDPKDLQQEITDGDVE+P D
Subjt:  HNGNISLDDVIEIAREILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

A0A5D3DNF2 60S ribosomal protein L12

8.2e-65

84.34

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Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV          ALKEPERDRKKTKNIK
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        HNGNISLDDVIEIAR                EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Subjt:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

SwissProt top hits

e value

%identity

Alignment

O50003 60S ribosomal protein L12

1.8e-61

77.71

Show/hide

Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        MPPK DPSQVV+V+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA +WKGLRVTVKLTVQNRQAKVSV          ALKEPERDRKKTKNIK
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIA----------------REILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        H+G+ISLDDVIEIA                +EIL TCVSVGCTVDGKDPKDLQQEI DGDVEIP D
Subjt:  HNGNISLDDVIEIA----------------REILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

P0CT83 60S ribosomal protein L12-A

6.7e-48

60.84

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Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        MPPK DP++V  +F+R  GGEV   S+LAPKIGPLGLSPKK+GEDIAK T K+WKGLRVTVKLT+QNRQA VSV          ALKEP RDRKK KN+ 
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        H+GN+SLD++IE+AR                EILGT  SVGCTVDGK+P D+Q+EI +G++EIPQ+
Subjt:  HNGNISLDDVIEIAR----------------EILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

P50883 60S ribosomal protein L12-1

6.3e-62

76.51

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Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKV+V          ALKEPERDRKK KNIK
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIA----------------REILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        HNGNIS DDV EIA                REILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP++
Subjt:  HNGNISLDDVIEIA----------------REILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

Q9FF52 60S ribosomal protein L12-3

2.4e-61

75.3

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Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKV+V          ALKEPERDRKK KNIK
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIA----------------REILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        HNGNIS DDVIEIA                +EILGTCVSVGCTVDGKDPKDLQ+EI  GD++IP +
Subjt:  HNGNISLDDVIEIA----------------REILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

Q9LFH5 60S ribosomal protein L12-2

1.4e-61

75.9

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Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKV+V          ALKEPERDRKK KNIK
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIA----------------REILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        HNGNIS DDV EIA                REILGTCVSVGCTVDGKDPKDLQQEI +G++EIP++
Subjt:  HNGNISLDDVIEIA----------------REILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

Arabidopsis top hits

e value

%identity

Alignment

AT2G37190.1 Ribosomal protein L11 family protein

4.5e-63

76.51

Show/hide

Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKV+V          ALKEPERDRKK KNIK
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIA----------------REILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        HNGNIS DDV EIA                REILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP++
Subjt:  HNGNISLDDVIEIA----------------REILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

AT3G53430.1 Ribosomal protein L11 family protein

1.0e-62

75.9

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Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKV+V          ALKEPERDRKK KNIK
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIA----------------REILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        HNGNIS DDV EIA                REILGTCVSVGCTVDGKDPKDLQQEI +G++EIP++
Subjt:  HNGNISLDDVIEIA----------------REILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

AT5G60670.1 Ribosomal protein L11 family protein

1.7e-62

75.3

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Query:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK
        MPPKLDPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKV+V          ALKEPERDRKK KNIK
Subjt:  MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSV----------ALKEPERDRKKTKNIK

Query:  HNGNISLDDVIEIA----------------REILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
        HNGNIS DDVIEIA                +EILGTCVSVGCTVDGKDPKDLQ+EI  GD++IP +
Subjt:  HNGNISLDDVIEIA----------------REILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCGCCCAAGCTCGATCCTTCTCAGGTCGTCGAGGTTTTCGTCCGAGTCACCGGAGGTGAGGTCGGAGCTGCCAGTTCTCTCGCTCCCAAAATCGGTCCTCTAGGTCT
CTCCCCAAAGAAGATCGGAGAAGACATTGCCAAGGAGACTGCCAAGGAATGGAAGGGTCTCAGAGTTACCGTCAAGCTTACTGTGCAGAACCGTCAAGCCAAGGTCTCGG
TGGCCCTCAAAGAGCCTGAACGCGACCGCAAGAAGACCAAGAACATCAAGCACAATGGTAATATCTCGCTTGACGATGTTATTGAGATTGCTAGGGAGATTCTCGGTACT
TGCGTTTCTGTTGGGTGTACGGTCGATGGTAAGGACCCGAAGGATTTGCAGCAGGAAATTACTGATGGGGATGTTGAAATTCCTCAGGATTGA

mRNA sequence

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Protein sequence

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MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSVALKEPERDRKKTKNIKHNGNISLDDVIEIAREILGT
CVSVGCTVDGKDPKDLQQEITDGDVEIPQD

PI0018972 (gene) of Melon (PI 482460) v1 genome