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PI0019023 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019023
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationchr02:20892249..20893392
RNA-Seq ExpressionPI0019023
SyntenyPI0019023
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146667.1 uncharacterized protein LOC101206545 [Cucumis sativus]1.7e-5591.41Show/hide
Query:  MATVDSSFIFIRISAVPHPLLNNNNNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEE
        MA VDSSFIFI  S VPHPLL  NNNNGRKFGITSAKRTQDSDSDS SS QPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE+
Subjt:  MATVDSSFIFIRISAVPHPLLNNNNNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEE

Query:  LLKIGALLVVPFCVFLIFSFSKFDSDSS
        LLKIGALLVVPFCVFL+FSFSK+DSDSS
Subjt:  LLKIGALLVVPFCVFLIFSFSKFDSDSS

XP_008443827.1 PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]3.5e-5693.8Show/hide
Query:  MATVDSSFIFIRISAVPHPLLNNN-NNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
        MA VDSSFIFI ISAVPHPLLNNN NNNGRKFGITSAKRTQ  DSDSTSS QPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
Subjt:  MATVDSSFIFIRISAVPHPLLNNN-NNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE

Query:  ELLKIGALLVVPFCVFLIFSFSKFDSDSS
        ELLKIGA LVVPFCVFL+FSFSKFDSDSS
Subjt:  ELLKIGALLVVPFCVFLIFSFSKFDSDSS

XP_022933449.1 uncharacterized protein LOC111440861 [Cucurbita moschata]3.2e-4176.56Show/hide
Query:  MATVDSSFIFIRISAVPHPLLNNNNNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEE
        M   DSSFIF  +SA+PHPLL  +NNN RKFG TSAKRT DSD     SI   Q KFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+
Subjt:  MATVDSSFIFIRISAVPHPLLNNNNNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEE

Query:  LLKIGALLVVPFCVFLIFSFSKFDSDSS
        LLKIGA LVVPFCVFLIFSFS+  +DSS
Subjt:  LLKIGALLVVPFCVFLIFSFSKFDSDSS

XP_023531156.1 uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo]2.2e-4278.12Show/hide
Query:  MATVDSSFIFIRISAVPHPLLNNNNNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEE
        M   DS+FIF  +SA+PHPLL  +NNN RKFG TSAKRT DSDSDS SS    Q KFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+
Subjt:  MATVDSSFIFIRISAVPHPLLNNNNNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEE

Query:  LLKIGALLVVPFCVFLIFSFSKFDSDSS
        LLKIGA LVVPFCVFLIFSFS+  +DSS
Subjt:  LLKIGALLVVPFCVFLIFSFSKFDSDSS

XP_038879768.1 uncharacterized protein LOC120071517 [Benincasa hispida]1.4e-4479.69Show/hide
Query:  MATVDSSFIFIRISAVPHPLLNNNNNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEE
        MA V+SSFIFI +S VP+PL  +NNN+ RKF ITSAK T+DSDSDS SS    Q KFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIG ITKE+EE
Subjt:  MATVDSSFIFIRISAVPHPLLNNNNNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEE

Query:  LLKIGALLVVPFCVFLIFSFSKFDSDSS
        LLKIGA LVVPFCVFL+FSFS+ DSDSS
Subjt:  LLKIGALLVVPFCVFLIFSFSKFDSDSS

TrEMBL top hitse value%identityAlignment
A0A0A0LWH4 Uncharacterized protein8.3e-5691.41Show/hide
Query:  MATVDSSFIFIRISAVPHPLLNNNNNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEE
        MA VDSSFIFI  S VPHPLL  NNNNGRKFGITSAKRTQDSDSDS SS QPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE+
Subjt:  MATVDSSFIFIRISAVPHPLLNNNNNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEE

Query:  LLKIGALLVVPFCVFLIFSFSKFDSDSS
        LLKIGALLVVPFCVFL+FSFSK+DSDSS
Subjt:  LLKIGALLVVPFCVFLIFSFSKFDSDSS

A0A1S3B903 uncharacterized protein LOC1034873291.7e-5693.8Show/hide
Query:  MATVDSSFIFIRISAVPHPLLNNN-NNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
        MA VDSSFIFI ISAVPHPLLNNN NNNGRKFGITSAKRTQ  DSDSTSS QPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
Subjt:  MATVDSSFIFIRISAVPHPLLNNN-NNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE

Query:  ELLKIGALLVVPFCVFLIFSFSKFDSDSS
        ELLKIGA LVVPFCVFL+FSFSKFDSDSS
Subjt:  ELLKIGALLVVPFCVFLIFSFSKFDSDSS

A0A6J1C0R6 uncharacterized protein LOC1110073014.5e-3370.16Show/hide
Query:  DSSFIFIRISAVPHPLLNNNNNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKI
        DS+FIF   SAV   L N NN   R F    AKRT   DS +T S Q NQF+FPSLRV NPL+AR VVSVLGLGFVDAGYSGDWSRIGAITKE+E+LLKI
Subjt:  DSSFIFIRISAVPHPLLNNNNNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKI

Query:  GALLVVPFCVFLIFSFSKFDSDSS
        GA LVVPFCVFLI SF+K  +DSS
Subjt:  GALLVVPFCVFLIFSFSKFDSDSS

A0A6J1EZT4 uncharacterized protein LOC1114408611.5e-4176.56Show/hide
Query:  MATVDSSFIFIRISAVPHPLLNNNNNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEE
        M   DSSFIF  +SA+PHPLL  +NNN RKFG TSAKRT DSD     SI   Q KFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+
Subjt:  MATVDSSFIFIRISAVPHPLLNNNNNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEE

Query:  LLKIGALLVVPFCVFLIFSFSKFDSDSS
        LLKIGA LVVPFCVFLIFSFS+  +DSS
Subjt:  LLKIGALLVVPFCVFLIFSFSKFDSDSS

A0A6J1KT82 uncharacterized protein LOC1114980163.4e-4175.78Show/hide
Query:  MATVDSSFIFIRISAVPHPLLNNNNNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEE
        M   DSSFIF  +SA+PHPL+  +NNN RKFG TSAKRT DSD     SI   Q KFPSLRVSNPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+
Subjt:  MATVDSSFIFIRISAVPHPLLNNNNNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEE

Query:  LLKIGALLVVPFCVFLIFSFSKFDSDSS
         LKIGA LVVPFCVFLIFSFS+  +DSS
Subjt:  LLKIGALLVVPFCVFLIFSFSKFDSDSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30845.1 unknown protein2.5e-2050.48Show/hide
Query:  NNNNGRKF--GITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGALLVVPFCVFLIFSFS
        N+N  R F  G+T   + +D  S+ ++  +P       ++V N ++ARS ++VL LGF+DAGYSGDWSRIG I+KETEELLKI A LVVP C+FL  SFS
Subjt:  NNNNGRKF--GITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGALLVVPFCVFLIFSFS

Query:  KFDSD
           +D
Subjt:  KFDSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGGTAGATTCAAGCTTTATCTTCATCCGTATCTCCGCCGTACCTCATCCCCTTTTGAACAACAACAACAATAATGGCAGAAAATTCGGAATCACGTCGGCAAA
ACGTACACAAGATTCCGATTCAGATTCCACTTCATCAATCCAACCAAATCAATTCAAATTTCCATCGCTGAGAGTATCAAATCCACTTCTCGCCCGATCTGTCGTTTCGG
TTCTCGGATTAGGGTTCGTCGATGCAGGGTATAGCGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAACTGAAGAATTGCTTAAGATTGGAGCTTTGTTGGTGGTT
CCGTTTTGTGTATTTCTCATTTTTTCTTTCTCAAAATTTGATTCGGATTCTTCGTAA
mRNA sequenceShow/hide mRNA sequence
CCTGTTTTGTCCAGAAACTCAACTTTTAACAAAGCAATCCTATATTTTTGTAATTCCCCCAAGAAATTTAATGGTAGAATTCGTACTCCCCACTTGTTCTCTGTTTTTAA
TGGAAAAAGGATGCGGCCGTAATTCATTTCCACCGGCACTCATTTCAGATTTTCCATAACTGTCCAACTTCAATTGACAATGGCGACGGTAGATTCAAGCTTTATCTTCA
TCCGTATCTCCGCCGTACCTCATCCCCTTTTGAACAACAACAACAATAATGGCAGAAAATTCGGAATCACGTCGGCAAAACGTACACAAGATTCCGATTCAGATTCCACT
TCATCAATCCAACCAAATCAATTCAAATTTCCATCGCTGAGAGTATCAAATCCACTTCTCGCCCGATCTGTCGTTTCGGTTCTCGGATTAGGGTTCGTCGATGCAGGGTA
TAGCGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAACTGAAGAATTGCTTAAGATTGGAGCTTTGTTGGTGGTTCCGTTTTGTGTATTTCTCATTTTTTCTTTCT
CAAAATTTGATTCGGATTCTTCGTAAGTGTATGGATGATGGATTCCCCAAAATGGTTAGAAATAATCTCAATTTGAAGATGGTAGCTAAGCTAAAGTTGTTTCTTTGCTT
AGAAGGGAGATTTTGAAGAACATGTACAAAATTCATTTACTGATATGCACATGTTTGATGTTGGTTTCCACTTCCATGTTTTAGACTTTAGTTGGTGTCACTAAGTTTGG
AAATAATACATGAATGAGACGAAATCATATTTGAACGAGTTAAAATTTATGGATATAAAATTGTAGTTTAAACACTTATAAAATTTTAGTAGCTCGTTGGCTAAAGTGTG
CGAAGGAGACAACCTTGTAAGCATGTTTCAATTGACTTGTATTTCCGTTTCTTGAAGTTGTTTGAGGCTACATTTGTTGTACACTTACAGTTTTTTTTTTTCTTTTTAGA
CCAACTCAACTATCGTTGAGCTAAACTCACTTTGGTGAGATTGGTGTTCGTAG
Protein sequenceShow/hide protein sequence
MATVDSSFIFIRISAVPHPLLNNNNNNGRKFGITSAKRTQDSDSDSTSSIQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGALLVV
PFCVFLIFSFSKFDSDSS