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PI0019026 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019026
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon opus
Genome locationchr07:14337385..14337687
RNA-Seq ExpressionPI0019026
SyntenyPI0019026
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH92231.1 hypothetical protein [Trifolium medium]5.7e-2364.2Show/hide
Query:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN
        D AKIDVI  LP+P C++++RSFLG A FYRRFIK+FS+IALPL++LLQKD+ F  DDKCKRAF+ +K+ L STP++Q P+
Subjt:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN

XP_021603241.1 uncharacterized protein LOC110608326 [Manihot esculenta]8.0e-2566.67Show/hide
Query:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN
        DKAK+DVI+ LPYP C++D+RSFLG A FYRRFIK+FSRIA PL  LLQKDVPF  D++C+ AFN +K++LV+ PI+Q+PN
Subjt:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN

XP_028797073.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114752508 [Prosopis alba]6.8e-2466.67Show/hide
Query:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN
        DKAKID+I  LPYP C+KDVRSFLG A FYRRFI++FS+IALPL+ LLQKDV F+ DD C+ A++E+K+RL + PI+Q PN
Subjt:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN

XP_028798815.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114754213 [Prosopis alba]6.8e-2466.67Show/hide
Query:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN
        DKAKID+I  LPYP C+KDVRSFLG A FYRRFI++FS+IALPL+ LLQKDV F+ DD C+ A++E+K+RL + PI+Q PN
Subjt:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN

XP_028802716.1 uncharacterized protein LOC114757797 [Prosopis alba]5.2e-2466.67Show/hide
Query:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN
        DKAKID+I  LPYP C+KDVRSFLG A FYRRFI++FS+IALPL+ LLQKDV F+ DD C+ A++E+K+RL + PI+Q PN
Subjt:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN

TrEMBL top hitse value%identityAlignment
A0A0L9TXH6 Reverse transcriptase1.4e-2261.73Show/hide
Query:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN
        D AKI VI +LPYP C+++VRSFLG A FYRRFIK+FS+  LPL+ LLQKD+ F  DD+CK+AF+ +KQ L++TPI+Q+P+
Subjt:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN

A0A371ET64 Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment)8.1e-2365.43Show/hide
Query:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN
        DKAKID+I  LP P  +++VRSFLG ASFY+RFIKNFS+IALPL+ LLQKDV F+ + +C +AF E+K +L+STPILQ+PN
Subjt:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN

A0A371I0Q2 Retrovirus-related Pol polyprotein from transposon opus (Fragment)6.2e-2369.14Show/hide
Query:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN
        DKAKIDVI  LP P  ++DVRSFLG ASFYRRFI+NFS+IALPL+ LLQKDV F+ D  C  AF E+K RL  TPILQ+PN
Subjt:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN

A0A371IAU2 Retrovirus-related Pol polyprotein (Fragment)1.1e-2267.9Show/hide
Query:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN
        D+ KIDVI  LP P  L++VRSFLG A+FYRRFIK+FS+IALPL+ LLQKDV FI D  C  AF E+K+RL STPILQ+PN
Subjt:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN

A0A392MXJ5 Uncharacterized protein (Fragment)2.8e-2364.2Show/hide
Query:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN
        D AKIDVI  LP+P C++++RSFLG A FYRRFIK+FS+IALPL++LLQKD+ F  DDKCKRAF+ +K+ L STP++Q P+
Subjt:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN

SwissProt top hitse value%identityAlignment
P03359 Gag-Pol polyprotein1.7e-0937.97Show/hide
Query:  AKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN
        A+   + K+P P   + VR FLG+A F R +I  F+ +A PL  L ++ +PFI  ++ ++AF+ IK+ L+S P L  P+
Subjt:  AKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN

P10394 Retrovirus-related Pol polyprotein from transposon 4128.1e-1240.74Show/hide
Query:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN
        D  K DVIQ  P P      R F+   ++YRRFIKNF+  +  +T L +K+VPF   D+C++AF  +K +L++  +LQ P+
Subjt:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN

P10401 Retrovirus-related Pol polyprotein from transposon gypsy3.7e-0936.36Show/hide
Query:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQ-----------KDVPFIIDDKCKRAFNEIKQRLVSTPIL
        D  K+  IQ+ P P C+  VRSFLG AS+YR FIK+F+ IA P+T +L+           K +P   ++  + AF  ++  L S  ++
Subjt:  DKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQ-----------KDVPFIIDDKCKRAFNEIKQRLVSTPIL

P21414 Gag-Pol polyprotein1.7e-0937.97Show/hide
Query:  AKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN
        A+   + K+P P   + VR FLG+A F R +I  F+ +A PL  L ++ +PFI  ++ ++AF+ IK+ L+S P L  P+
Subjt:  AKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus7.6e-1031.91Show/hide
Query:  VSHDKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQ-----------KDVPFIIDDKCKRAFNEIKQRLVSTPILQSP
        +  D  K+  I ++P P  +K+++ FLG  S+YR+FI++++++A PLT+L +             VP  +D+   ++FN++K  L S+ IL  P
Subjt:  VSHDKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQ-----------KDVPFIIDDKCKRAFNEIKQRLVSTPILQSP

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.5e-1036.9Show/hide
Query:  VSHDKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN
        VS D AK++ +   P PK   ++R FLG   +YRRF+KN+ +I  PLT LL+K+      +    AF  +K  + + P+L  P+
Subjt:  VSHDKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTCATGATAAAGCTAAAATCGACGTAATTCAAAAACTGCCATATCCAAAATGCTTAAAAGATGTTAGATCATTTTTAGGAAGCGCCAGTTTTTATAGAAGGTT
TATTAAAAACTTTTCTAGAATTGCTTTACCTCTAACTTCTCTTCTTCAGAAAGATGTACCATTCATTATAGATGACAAGTGCAAAAGAGCATTTAATGAGATCAAGCAAA
GGTTAGTATCTACTCCTATACTTCAATCTCCTAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCTCATGATAAAGCTAAAATCGACGTAATTCAAAAACTGCCATATCCAAAATGCTTAAAAGATGTTAGATCATTTTTAGGAAGCGCCAGTTTTTATAGAAGGTT
TATTAAAAACTTTTCTAGAATTGCTTTACCTCTAACTTCTCTTCTTCAGAAAGATGTACCATTCATTATAGATGACAAGTGCAAAAGAGCATTTAATGAGATCAAGCAAA
GGTTAGTATCTACTCCTATACTTCAATCTCCTAACTAG
Protein sequenceShow/hide protein sequence
MVSHDKAKIDVIQKLPYPKCLKDVRSFLGSASFYRRFIKNFSRIALPLTSLLQKDVPFIIDDKCKRAFNEIKQRLVSTPILQSPN