CuGenDBv2

Gene ID	PI0019032
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr06:10655923..10656496
RNA-Seq Expression	PI0019032
Synteny	PI0019032
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025502.1 retrotransposon protein [Cucumis melo var. makuwa]

2.6e-48

58.54

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Query:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT
        M+A+K+ GC ++ +  IDC+IK +K+TFQAIAE+RGS+CSGFGWNDE KCIIAE++LFDNW++SHPA KGLL K FP+Y++L YVF +D ATG  AETFT
Subjt:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT

Query:  NVGSNVP-GGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ
        +VGSN P GG++ F    EN+ + P +Y+ G+D+  DD   S+P R  EGRT SS SKRK+  Q
Subjt:  NVGSNVP-GGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ

KAA0050293.1 retrotransposon protein [Cucumis melo var. makuwa]

1.3e-47

57.32

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Query:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT
        M+AKK+ GC ++ +  IDC+IK +K+TFQAIAE+RG +CSGFGWNDE KCI+AE++LFDNW++SHP  KGLLNK FP+Y++L YVF +D ATG  AETF 
Subjt:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT

Query:  NVGSNVPG-GFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ
        +VGSN PG G++ F     N+ + P++Y+ G+D+  DD   SRP R  EGRT SS SKRK+  Q
Subjt:  NVGSNVPG-GFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ

KAA0062588.1 retrotransposon protein [Cucumis melo var. makuwa]

2.6e-48

57.93

Show/hide

Query:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT
        M+A+K+ GC ++ +  IDC+IK +K+TFQAIAE+RG +CSGFGWNDE KCI+AE++LFDNW++SHPA KGLLNK FP+Y++L YVF +D ATG  AETF 
Subjt:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT

Query:  NVGSNVP-GGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ
        +VGSN P GG++ F     N+ + P +Y+ G+D+  DD   SRP R  EGRT SSRSKRK+  Q
Subjt:  NVGSNVP-GGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ

KAA0064022.1 retrotransposon protein [Cucumis melo var. makuwa]

2.0e-48

58.54

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Query:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT
        M+AKK+ GC ++ +  IDC+IK +K+TFQAIAE+RG +CSGFGWNDE KCI+AE++LFDNW++SHPA KGLLNKSFP+Y++L YVF +D ATG  AETF 
Subjt:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT

Query:  NVGSNVP-GGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ
        +VGSN P GG++ F     N+ + P +Y+ G+D+  DD   SRP R  EGRT SS SKRK+  Q
Subjt:  NVGSNVP-GGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]

1.7e-47

57.93

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Query:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT
        M+A+K+ GC ++ +  IDC+IK +K+TFQAIAE+RG +CSGFGWNDE KCIIAE++LFDNW++SHPA KGLLNK FP+Y++L YVF +D ATG  AETF 
Subjt:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT

Query:  NVGSNVP-GGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ
        +VGSN P GG++ F     N+ + P +Y+ G+D+  DD   SRP R  EGRT SS SKRK+  Q
Subjt:  NVGSNVP-GGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SK51 Retrotransposon protein

1.3e-48

58.54

Show/hide

Query:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT
        M+A+K+ GC ++ +  IDC+IK +K+TFQAIAE+RGS+CSGFGWNDE KCIIAE++LFDNW++SHPA KGLL K FP+Y++L YVF +D ATG  AETFT
Subjt:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT

Query:  NVGSNVP-GGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ
        +VGSN P GG++ F    EN+ + P +Y+ G+D+  DD   S+P R  EGRT SS SKRK+  Q
Subjt:  NVGSNVP-GGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ

A0A5A7U308 Retrotransposon protein

6.3e-48

57.32

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Query:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT
        M+AKK+ GC ++ +  IDC+IK +K+TFQAIAE+RG +CSGFGWNDE KCI+AE++LFDNW++SHP  KGLLNK FP+Y++L YVF +D ATG  AETF 
Subjt:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT

Query:  NVGSNVPG-GFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ
        +VGSN PG G++ F     N+ + P++Y+ G+D+  DD   SRP R  EGRT SS SKRK+  Q
Subjt:  NVGSNVPG-GFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ

A0A5A7USM3 Retrotransposon protein

8.3e-48

57.32

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Query:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT
        M+AKK+ GC ++ +  IDC+IK +K+TFQAIAE+RG +CSGFGWNDE KCI+AE++LFDNW++SHPA KGLLNK FP+Y++L YVF +D ATG  AET+ 
Subjt:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT

Query:  NVGSNVP-GGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ
        +VGSN P GG++ F     N+ + P +Y+ G+D+  DD   SRP R  EGRT SS SKRK+  Q
Subjt:  NVGSNVP-GGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ

A0A5A7V4T0 Retrotransposon protein

1.3e-48

57.93

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Query:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT
        M+A+K+ GC ++ +  IDC+IK +K+TFQAIAE+RG +CSGFGWNDE KCI+AE++LFDNW++SHPA KGLLNK FP+Y++L YVF +D ATG  AETF 
Subjt:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT

Query:  NVGSNVP-GGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ
        +VGSN P GG++ F     N+ + P +Y+ G+D+  DD   SRP R  EGRT SSRSKRK+  Q
Subjt:  NVGSNVP-GGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ

A0A5A7V6Q9 Retrotransposon protein

9.8e-49

58.54

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Query:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT
        M+AKK+ GC ++ +  IDC+IK +K+TFQAIAE+RG +CSGFGWNDE KCI+AE++LFDNW++SHPA KGLLNKSFP+Y++L YVF +D ATG  AETF 
Subjt:  MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFT

Query:  NVGSNVP-GGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ
        +VGSN P GG++ F     N+ + P +Y+ G+D+  DD   SRP R  EGRT SS SKRK+  Q
Subjt:  NVGSNVP-GGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G30140.1 unknown protein

3.4e-09

32.61

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Query:  KMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARA
        K LGCN +       ++K +K  +Q+  +++  S SGFGW+ E K   A  +++ +++K+HP  K +  +S  H+ DL  +F   +ATG+ A
Subjt:  KMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARA

AT2G24960.2 unknown protein

4.2e-04

27.78

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Query:  SGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATG
        +GF W+     +IA+  +++ +I++HP  +    K+ P Y +L ++F K+ + G
Subjt:  SGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATG

AT4G02210.1 unknown protein

2.9e-05

21.15

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Query:  IQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFTN---------
        + G   +  + K ++  F+++  +      GF W+D  + ++A+  ++D ++K HP ++    KS P Y DL  V+   ++     E+ +          
Subjt:  IQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFTN---------

Query:  --------VGSNVPGGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEG
                  S V    +G S      T  P M  + +D++ D    +R G  +EG
Subjt:  --------VGSNVPGGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEG

AT4G02210.2 unknown protein

2.9e-05

21.15

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Query:  IQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFTN---------
        + G   +  + K ++  F+++  +      GF W+D  + ++A+  ++D ++K HP ++    KS P Y DL  V+   ++     E+ +          
Subjt:  IQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFTN---------

Query:  --------VGSNVPGGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEG
                  S V    +G S      T  P M  + +D++ D    +R G  +EG
Subjt:  --------VGSNVPGGFEGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEG

Sequences

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CDS sequence

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ATGCTGGCGAAGAAGATGCTTGGATGTAATATCCAAGGTTCGCCGACAATAGACTGTCAGATAAAAAACATGAAGAAAACATTCCAGGCCATTGCAGAAATACGCGGGTC
GTCGTGTAGTGGGTTCGGTTGGAACGATGAAGTGAAGTGCATCATCGCTGAGAGAAAGTTGTTCGACAATTGGATTAAGAGTCATCCTGCTACGAAGGGCCTCCTAAACA
AGTCATTTCCCCATTACAACGACCTGTTTTACGTATTTAGGAAGGATCTTGCGACGGGAGCTCGCGCGGAGACATTCACCAACGTCGGGTCGAATGTGCCTGGAGGGTTC
GAAGGATTTTCCGCTGATTATGAAAATGATACGGAGATCCCTATGATGTACAATCATGGACTAGACATGTTGCCTGATGACAAGGCGGGCTCACGCCCCGGTCGCTTGAT
GGAGGGTAGGACTAGTTCAAGCAGATCGAAGAGAAAGCAAAGAGGCCAGGTAGCATAG

mRNA sequence

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Protein sequence

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MLAKKMLGCNIQGSPTIDCQIKNMKKTFQAIAEIRGSSCSGFGWNDEVKCIIAERKLFDNWIKSHPATKGLLNKSFPHYNDLFYVFRKDLATGARAETFTNVGSNVPGGF
EGFSADYENDTEIPMMYNHGLDMLPDDKAGSRPGRLMEGRTSSSRSKRKQRGQVA

PI0019032 (gene) of Melon (PI 482460) v1 genome