; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0019033 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019033
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr08:12358836..12359111
RNA-Seq ExpressionPI0019033
SyntenyPI0019033
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]6.6e-2569.51Show/hide
Query:  PRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTRVGRSSD
        P+ LLHKSFPYYDDL Y+FG+D+A  AR ETFADVG NVPN FN  VPL D HD+DIP MYSQGV MSPD+M G R G++S+
Subjt:  PRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTRVGRSSD

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]6.3e-2869.66Show/hide
Query:  FLQSHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTRVGRSSD
        +L+SHP  + LL+KSFPYYDD+SY+FG+DQA  AR ETFADVG N+PN FND VPLGD H EDIPTMYSQGV MS D+M GTR G++S+
Subjt:  FLQSHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTRVGRSSD

KAA0056515.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.8e-2566.28Show/hide
Query:  SHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTRVGRSSD
        SHP  + LLHKSFPYYDDLSY+FG+D+A   R ETF+ VG NVPN FND VPLGD H++DIP MYSQGV MS D+M G R G++S+
Subjt:  SHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTRVGRSSD

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-2872.29Show/hide
Query:  FLQSHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTR
        +++SHP  + LLHKSFPYYDDLSY+FG+D+A GAR ETF DVG NVPN FND++PLGD HDEDIPTMYSQGV +SPD+M G R
Subjt:  FLQSHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTR

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]5.7e-2968.54Show/hide
Query:  FLQSHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTRVGRSSD
        +++SHP  + LLHKSFPYYDDLSY+FG+D+A GAR ETF +VG NV N FND++PLGD HDEDIPTMYSQGV MSPD+M G R G++S+
Subjt:  FLQSHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTRVGRSSD

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.8e-2968.54Show/hide
Query:  FLQSHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTRVGRSSD
        +++SHP  + LLHKSFPYYDDLSY+FG+D+A GAR ETF +VG NV N FND++PLGD HDEDIPTMYSQGV MSPD+M G R G++S+
Subjt:  FLQSHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTRVGRSSD

A0A5A7U0H7 Retrotransposon protein2.8e-2968.54Show/hide
Query:  FLQSHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTRVGRSSD
        +++SHP  + LLHKSFPYYDDLSY+FG+D+A GAR ETF +VG NV N FND++PLGD HDEDIPTMYSQGV MSPD+M G R G++S+
Subjt:  FLQSHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTRVGRSSD

A0A5A7USN6 Putative nuclease HARBI11.9e-2566.28Show/hide
Query:  SHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTRVGRSSD
        SHP  + LLHKSFPYYDDLSY+FG+D+A   R ETF+ VG NVPN FND VPLGD H++DIP MYSQGV MS D+M G R G++S+
Subjt:  SHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTRVGRSSD

A0A5D3CVB7 Retrotransposon protein3.1e-2869.66Show/hide
Query:  FLQSHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTRVGRSSD
        +L+SHP  + LL+KSFPYYDD+SY+FG+DQA  AR ETFADVG N+PN FND VPLGD H EDIPTMYSQGV MS D+M GTR G++S+
Subjt:  FLQSHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTRVGRSSD

A0A5D3DG22 Retrotransposon protein8.1e-2972.29Show/hide
Query:  FLQSHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTR
        +++SHP  + LLHKSFPYYDDLSY+FG+D+A GAR ETF DVG NVPN FND++PLGD HDEDIPTMYSQGV +SPD+M G R
Subjt:  FLQSHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTTACAGAGTCATCCTGTGCCCAGAAGACTTTTGCACAAATCATTTCCATATTATGACGATCTGTCATATCTCTTCGGTAGAGATCAAGCAATAGGTGCACGAGT
AGAGACCTTTGCTGACGTGGGATTTAATGTGCCAAACAGTTTTAATGACAGTGTTCCACTTGGTGATTTACATGATGAAGACATCCCGACGATGTATAGCCAAGGAGTGG
ATATGTCACCCGATGACATGTTAGGAACACGTGTAGGTCGATCAAGTGATGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTTACAGAGTCATCCTGTGCCCAGAAGACTTTTGCACAAATCATTTCCATATTATGACGATCTGTCATATCTCTTCGGTAGAGATCAAGCAATAGGTGCACGAGT
AGAGACCTTTGCTGACGTGGGATTTAATGTGCCAAACAGTTTTAATGACAGTGTTCCACTTGGTGATTTACATGATGAAGACATCCCGACGATGTATAGCCAAGGAGTGG
ATATGTCACCCGATGACATGTTAGGAACACGTGTAGGTCGATCAAGTGATGGGTGA
Protein sequenceShow/hide protein sequence
MFLQSHPVPRRLLHKSFPYYDDLSYLFGRDQAIGARVETFADVGFNVPNSFNDSVPLGDLHDEDIPTMYSQGVDMSPDDMLGTRVGRSSDG