CuGenDBv2

Gene ID	PI0019035
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Transcription initiation factor IIF subunit beta
Genome location	chr09:17305055..17317381
RNA-Seq Expression	PI0019035
Synteny	PI0019035
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR003196 - Transcription initiation factor IIF, beta subunit IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily IPR040450 - TFIIF beta subunit, HTH domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004143805.1 general transcription factor IIF subunit 2 isoform X3 [Cucumis sativus]

1.2e-146

96.75

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
        MDVDGKSIDRSTSRKHQTNNN+IV GTDFLETNKADRAMWLLKCPQ+VTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
Subjt:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSE
        SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGA EKKKVVSKGSE
Subjt:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSE

Query:  TKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR
        TKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEY+ESSE+ KPR
Subjt:  TKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR

XP_008465664.1 PREDICTED: general transcription factor IIF subunit 2 isoform X1 [Cucumis melo]

7.8e-146

95.41

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
        MDVDGKSIDRSTSRKHQTNNNNIV GTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
Subjt:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESSQ------GKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKV
        SY+LNMSTDFIPMSVFSESSQ      GKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGA EKKKV
Subjt:  SYSLNMSTDFIPMSVFSESSQ------GKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKV

Query:  VSKGSETKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR
        VSKGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEE KPR
Subjt:  VSKGSETKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR

XP_008465665.1 PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo]

8.4e-148

97.47

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
        MDVDGKSIDRSTSRKHQTNNNNIV GTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
Subjt:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSE
        SY+LNMSTDFIPMSVFSESSQGKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGA EKKKVVSKGSE
Subjt:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSE

Query:  TKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR
        TKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEE KPR
Subjt:  TKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR

XP_031741396.1 general transcription factor IIF subunit 2 isoform X2 [Cucumis sativus]

4.6e-138

78.82

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTE---------------
        MDVDGKSIDRSTSRKHQTNNN+IV GTDFLETNKADRAMWLLKCPQ+VTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTE               
Subjt:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTE---------------

Query:  ------------------------------------------------FTMELASTDSGNALRSYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMK
                                                        FTMELASTDSGNALRSYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMK
Subjt:  ------------------------------------------------FTMELASTDSGNALRSYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMK

Query:  PHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSETKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQP
        PHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGA EKKKVVSKGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQP
Subjt:  PHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSETKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQP

Query:  EQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR
        EQYMKEILKDLCVYNNKGVHQGTYELKPEY+ESSE+ KPR
Subjt:  EQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR

XP_038889594.1 general transcription factor IIF subunit 2-like [Benincasa hispida]

1.5e-141

94.93

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
        MDVDGKSIDR +SRK Q NNN++V GTDFLETNKADRAMWLLKCPQVVTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN LR
Subjt:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSE
        SYSLNMSTDFIPMSVFSESSQGKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGA EKKKVVSKGSE
Subjt:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSE

Query:  TKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKP
        TKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES EE KP
Subjt:  TKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPB8 Transcription initiation factor IIF subunit beta

4.1e-148

97.47

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
        MDVDGKSIDRSTSRKHQTNNNNIV GTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
Subjt:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSE
        SY+LNMSTDFIPMSVFSESSQGKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGA EKKKVVSKGSE
Subjt:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSE

Query:  TKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR
        TKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEE KPR
Subjt:  TKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR

A0A1S3CPE2 Transcription initiation factor IIF subunit beta

3.8e-146

95.41

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
        MDVDGKSIDRSTSRKHQTNNNNIV GTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
Subjt:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESSQ------GKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKV
        SY+LNMSTDFIPMSVFSESSQ      GKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGA EKKKV
Subjt:  SYSLNMSTDFIPMSVFSESSQ------GKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKV

Query:  VSKGSETKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR
        VSKGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEE KPR
Subjt:  VSKGSETKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR

A0A6J1BZ89 Transcription initiation factor IIF subunit beta

5.5e-137

91.37

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNNIV-AGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNAL
        MDVD K IDR +SRK QTNNN++   GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSGN+L
Subjt:  MDVDGKSIDRSTSRKHQTNNNNIV-AGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNAL

Query:  RSYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGS
        RSYSLNMSTDFIPMSVFSES  GKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGA EKKKVVSKGS
Subjt:  RSYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGS

Query:  ETKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR
        ETKRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKES +E K R
Subjt:  ETKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR

A0A6J1HK34 Transcription initiation factor IIF subunit beta

2.0e-134

90.25

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
        MD D K IDR +SRK  +N++   AGTDFLETNKADRAMWLLKCPQVVTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSG ALR
Subjt:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSE
        +YSLNMSTDFIPMSVFSES+QGKFT+EGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGA EKKKVVSKGSE
Subjt:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSE

Query:  TKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR
         KRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ EE KPR
Subjt:  TKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR

A0A6J1JIQ3 Transcription initiation factor IIF subunit beta

6.7e-135

90.61

Show/hide

Query:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR
        MD D K IDR +SRK  +N++  VAGTDFLETNKADRAMWLLKCPQVVTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSG ALR
Subjt:  MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALR

Query:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSE
        +YSLNMSTDFIPMSVFSES+QGKFT+EGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGA EKKKVVSKGSE
Subjt:  SYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSE

Query:  TKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR
         KRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ EE KPR
Subjt:  TKRLRKERGELEKIIFRLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR

SwissProt top hits

e value

%identity

Alignment

P13984 General transcription factor IIF subunit 2

1.3e-13

27.38

Show/hide

Query:  KADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAST-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGK
        K +  +WL+K P+ +++  + +              V  L+       +   FT+  +LA+  D G    S S      F+        ++VF+ESS  K
Subjt:  KADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAST-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGK

Query:  FTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSETKRLRKERGELEKIIFRLFERQS
         ++EG ++ + + +P     E Y +L R +  +S    R  Q +D V   + +P+          +E ++   K  + KR R ++  +  ++F  FE+  
Subjt:  FTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSETKRLRKERGELEKIIFRLFERQS

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMK
        Y+  K L+  T QP  Y+KEILK++ V N KG+H+ T+ELKPEY+    E K
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMK

P41900 General transcription factor IIF subunit 2

8.7e-15

27.41

Show/hide

Query:  LETNKADRAMWLLKCPQVVTRALSNSP----------DAPSRPVAKVIVSVDP-LQSNDDDDSSSTEFTMELASTDSGNALRSYSLNMSTDFIPMSVFS-
        L+ + A R +WL+K P+ + +    +P          +      A+V +S+ P + + D ++   TE  ++++   +   L  +S    +D    S  S 
Subjt:  LETNKADRAMWLLKCPQVVTRALSNSP----------DAPSRPVAKVIVSVDP-LQSNDDDDSSSTEFTMELASTDSGNALRSYSLNMSTDFIPMSVFS-

Query:  -ESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSETKRLRKERGELEKIIF
         +    K  +EG+I+ K + +P   N   Y KL  E   K+    R++Q ID +   + +P+      +    E+KK     +E K+ R ++  +  ++F
Subjt:  -ESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSETKRLRKERGELEKIIF

Query:  RLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMK
          FE+  Y+  K L++ T+QP  Y+KEILKD+C YN K  H+  +ELK EY+    E K
Subjt:  RLFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMK

Q01750 General transcription factor IIF subunit 2

8.7e-15

27.78

Show/hide

Query:  KADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAST-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGK
        K +  +WL+K P+ +++  + +P             V  L+   +   +   FT+  +LA+  D G    S S      F+        ++VF+ESS  K
Subjt:  KADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAST-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGK

Query:  FTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSETKRLRKERGELEKIIFRLFERQS
         ++EG ++ + + +P     E Y KL R +  +S    R  Q  D V   + +P+          +E ++   K  + KR R ++  +  ++F  FE+  
Subjt:  FTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSETKRLRKERGELEKIIFRLFERQS

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMK
        Y+  K L+  T QP  Y+KEILK++ + N KG+H+ T+ELKPEY+    E K
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMK

Q2T9L9 General transcription factor IIF subunit 2

1.1e-14

27.38

Show/hide

Query:  KADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAST-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGK
        K +  +WL+K P+ +++  + +P             V  L+   +   +   FT+  +LA+  D G    S S      F+        ++VF+ESS  K
Subjt:  KADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAST-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGK

Query:  FTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSETKRLRKERGELEKIIFRLFERQS
         ++EG ++ + + +P     E Y +L R +  +S    R  Q +D V   + +P+          +E ++   K  + KR R ++  +  ++F  FE+  
Subjt:  FTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSETKRLRKERGELEKIIFRLFERQS

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMK
        Y+  K L+  T QP  Y+K+ILK++ V N KG+H+ T+ELKPEY+    E K
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMK

Q8R0A0 General transcription factor IIF subunit 2

3.3e-14

27.38

Show/hide

Query:  KADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAST-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGK
        K +  +WL+K P+ +++  + +              V  L+   +   +   FT+  +LA+  D G    S S      F+        ++VF+ESS  K
Subjt:  KADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELAST-DSGNALRSYSLNMSTDFI-------PMSVFSESSQGK

Query:  FTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSETKRLRKERGELEKIIFRLFERQS
         ++EG ++ + + +P     E Y KL R +  +S    R  Q +D V   + +P+          +E ++   K  + KR R ++  +  ++F  FE+  
Subjt:  FTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSETKRLRKERGELEKIIFRLFERQS

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMK
        Y+  K L+  T QP  Y+KEILK++ + N KG+H+ T+ELKPEY+    E K
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMK

Arabidopsis top hits

e value

%identity

Alignment

AT1G75510.1 Transcription initiation factor IIF, beta subunit

6.1e-64

51.56

Show/hide

Query:  LETNKADRAMWLLKCPQVVTRALSN----------SPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALRSYSLNMSTDFIPMSVFSES
        L+  K+DR++WL+KCP VV +A             S D+P   +AK++  VDPL+     D S  EF M +   + GN  + Y+LNM TDF+PM  FS+ 
Subjt:  LETNKADRAMWLLKCPQVVTRALSN----------SPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALRSYSLNMSTDFIPMSVFSES

Query:  SQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAVEKKKVVS-KGSETKRLRKERGELEKIIFR
        +QG    EGK+ +KFDMKP+ + +E Y +LCRERT K+M K+RQIQVID+  G HMRPMPGM  ++S  + EK+K    K +E KR R++RGELE I+F+
Subjt:  SQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAVEKKKVVS-KGSETKRLRKERGELEKIIFR

Query:  LFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEE
        LFE Q  WT KQL+QETDQP Q++KEIL +LCVYN +G +QGTYELKPEYK+S+E+
Subjt:  LFERQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEE

AT3G52270.1 Transcription initiation factor IIF, beta subunit

4.8e-77

58.33

Show/hide

Query:  LETNKADRAMWLLKCPQVVTRALSN--------SPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALRSYSLNMSTDFIPMSVFSESSQ
        LET  A+R+M L+K P +V  +L +         PD P RP AKVI+ VDPL   D+     T+F MELA  DSGN  R Y+L+MS DFIPM+VF ESS 
Subjt:  LETNKADRAMWLLKCPQVVTRALSN--------SPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALRSYSLNMSTDFIPMSVFSESSQ

Query:  GKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSETKRLRKERGELEKIIFRLFER
        GK ++EGKI NKFDM+PH++N+E YG+LCRERT+K M K+RQIQVID+  G HMRPMPGM ++   A EKKK+ ++ SE KR R++R E+E+++F LFER
Subjt:  GKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSETKRLRKERGELEKIIFRLFER

Query:  QSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEE
        QS WT + LIQETDQPEQ++K++LKDLC+YNNKG +QGTYELKPEYK++++E
Subjt:  QSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACGTCGACGGCAAATCCATCGACCGTTCCACTTCCAGAAAACACCAAACCAATAACAACAACATCGTTGCTGGAACCGACTTCTTAGAGACTAACAAGGCGGACAG
AGCAATGTGGCTCTTGAAATGTCCCCAAGTTGTTACTCGCGCCCTTTCTAATTCACCCGATGCCCCTTCCCGTCCTGTCGCTAAGGTCATCGTTTCTGTTGACCCACTTC
AATCCAATGACGACGATGATTCTTCCTCTACTGAGTTCACCATGGAATTGGCTAGCACCGACTCTGGAAATGCATTAAGGTCCTACTCGTTGAATATGTCTACGGACTTC
ATTCCAATGTCTGTATTTTCCGAGTCATCACAAGGGAAGTTTACCATTGAAGGTAAAATACTGAACAAATTTGACATGAAGCCACATGATCAGAATCTTGAGAGGTACGG
GAAACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAAAGCAGACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCTATGCCAGGGATGGACGTCT
TGTCATTTGGAGCTGTAGAGAAGAAGAAAGTGGTGAGCAAGGGATCGGAAACAAAGCGGTTGAGAAAGGAGCGTGGTGAATTGGAGAAGATTATTTTTAGGCTTTTTGAA
AGACAGTCATATTGGACGTCAAAACAATTGATTCAAGAGACTGACCAACCTGAACAATATATGAAGGAAATACTTAAAGACCTTTGTGTCTACAACAACAAGGGCGTTCA
CCAAGGAACATATGAGCTGAAGCCAGAATACAAGGAATCAAGTGAGGAAATGAAACCACGATAG

mRNA sequence

Show/hide mRNA sequence

GTTACGGAAAAAAGCCTTTCTAACAAAAACCGTTTTCTTTCATTTCTTTTCAATTTTCCCACCTCCATTCCATTCATGTAATTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCCTCTTCTTCTCTCCAATGGACGTCGACGGCAAATCCATCGACCGTTCCACTTCCAGAAAACACCAAACCAATAACAACAACATCGTTGCTGGAACCG
ACTTCTTAGAGACTAACAAGGCGGACAGAGCAATGTGGCTCTTGAAATGTCCCCAAGTTGTTACTCGCGCCCTTTCTAATTCACCCGATGCCCCTTCCCGTCCTGTCGCT
AAGGTCATCGTTTCTGTTGACCCACTTCAATCCAATGACGACGATGATTCTTCCTCTACTGAGTTCACCATGGAATTGGCTAGCACCGACTCTGGAAATGCATTAAGGTC
CTACTCGTTGAATATGTCTACGGACTTCATTCCAATGTCTGTATTTTCCGAGTCATCACAAGGGAAGTTTACCATTGAAGGTAAAATACTGAACAAATTTGACATGAAGC
CACATGATCAGAATCTTGAGAGGTACGGGAAACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAAAGCAGACAGATTCAGGTGATTGATCATGTCACAGGAGGACAT
ATGAGGCCTATGCCAGGGATGGACGTCTTGTCATTTGGAGCTGTAGAGAAGAAGAAAGTGGTGAGCAAGGGATCGGAAACAAAGCGGTTGAGAAAGGAGCGTGGTGAATT
GGAGAAGATTATTTTTAGGCTTTTTGAAAGACAGTCATATTGGACGTCAAAACAATTGATTCAAGAGACTGACCAACCTGAACAATATATGAAGGAAATACTTAAAGACC
TTTGTGTCTACAACAACAAGGGCGTTCACCAAGGAACATATGAGCTGAAGCCAGAATACAAGGAATCAAGTGAGGAAATGAAACCACGATAGGTGAGGAATGTTCCAAGA
ACTGGGAAATGGCTTTGGTTTTGGTATTTGACTGAAGATTTGTGTGTAGAGGGAAGGGAAGGGATCTCTGCTCTTTTCTTTGGTTTAAGTGTAGGCTTAGGACGTCGCCA
TTCTGGAGTCATCAGTAACCACTGAAATTTTGTAGAAATGCGAACCCATCGTTGGTTTTTTCAGGAGGGTATATTATTGTACATAGTAATTACGGTTGGTTGCTGCTTTT
AATCGTAATTTCTGTTTAAAGTTCTTTTGTAATTTGTAAGTATTGATTGAATGCGGTTTCTACTTAAAAGTTAAAACTCATGAAATATCACATTAC

Protein sequence

Show/hide protein sequence

MDVDGKSIDRSTSRKHQTNNNNIVAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDAPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELASTDSGNALRSYSLNMSTDF
IPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAVEKKKVVSKGSETKRLRKERGELEKIIFRLFE
RQSYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEEMKPR

PI0019035 (gene) of Melon (PI 482460) v1 genome