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PI0019057 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019057
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr03:17614676..17615848
RNA-Seq ExpressionPI0019057
SyntenyPI0019057
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-3465.81Show/hide
Query:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAKAT---RINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF
        MLYL+E  D++R+LE R+EEIS+K + IDAV GR++G PI+EL+ RV+ L+        +NYERGDSSTGS+AH+EER+ ELDSSQK+++EMINGMS+DF
Subjt:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAKAT---RINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF

Query:  RATLDVVRNEIADVSAR
        RATLDVVRNEIADV+AR
Subjt:  RATLDVVRNEIADVSAR

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-3465.81Show/hide
Query:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAKAT---RINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF
        MLYL+E  D++R+LE R+EEIS+K + IDAV GR++G PI+EL+ RV+ L+        +NYERGDSSTGS+AH+EER+ ELDSSQK+++EMINGMS+DF
Subjt:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAKAT---RINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF

Query:  RATLDVVRNEIADVSAR
        RATLDVVRNEIADV+AR
Subjt:  RATLDVVRNEIADVSAR

KAA0039608.1 reverse transcriptase [Cucumis melo var. makuwa]8.1e-3534.33Show/hide
Query:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAK---ATRINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF
        MLYL++  D++R+LE R++EIS+K + IDAV GR++G PI+EL+ RV+ L+        + YERGDSSTGS+AH+EER+ ELDSSQK+++EMINGMS+DF
Subjt:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAK---ATRINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF

Query:  RATLDV------------------------------------------VRNEIADV--------------------------------------------
        RATLDV                                          + N I D+                                            
Subjt:  RATLDV------------------------------------------VRNEIADV--------------------------------------------

Query:  --------------------------SARALNH-------GRRPSYTNRGSKNSHRHTQRQNDYLTCPVTLKMRDVIQVPHLEEIRTIVQVLQRSEGEID
                                    R L H       GRR SY N+  K S   T + N  LTC  TLK+RDVIQVPHLEE+ T  QVL +     D
Subjt:  --------------------------SARALNH-------GRRPSYTNRGSKNSHRHTQRQNDYLTCPVTLKMRDVIQVPHLEEIRTIVQVLQRSEGEID

Query:  DLVVIVGPFNQTPGTQGEDRTPKTLTVVPLPVSYV
         L+ IV P N+   T GED+  +   +V L  SY+
Subjt:  DLVVIVGPFNQTPGTQGEDRTPKTLTVVPLPVSYV

KAA0050674.1 uncharacterized protein E6C27_scaffold673G001570 [Cucumis melo var. makuwa]1.8e-3466.67Show/hide
Query:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAK---ATRINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF
        MLYL+E  D++R+LE R+EEIS+K + IDAV GR++G PI+ELL RV+ L+        +NYERGDSSTGS+AH+EER+ ELDSSQK+++EMINGMS+DF
Subjt:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAK---ATRINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF

Query:  RATLDVVRNEIADVSAR
        RATLDVVRNEIADV+AR
Subjt:  RATLDVVRNEIADVSAR

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-3465.81Show/hide
Query:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAKAT---RINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF
        MLYL+E  D++R+LE R+EEIS+K + IDAV GR++G PI+EL+ RV+ L+        +NYERGDSSTGS+AH+EER+ ELDSSQK+++EMINGMS+DF
Subjt:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAKAT---RINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF

Query:  RATLDVVRNEIADVSAR
        RATLDVVRNEIADV+AR
Subjt:  RATLDVVRNEIADVSAR

TrEMBL top hitse value%identityAlignment
A0A5A7T9P9 Reverse transcriptase3.9e-3534.33Show/hide
Query:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAK---ATRINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF
        MLYL++  D++R+LE R++EIS+K + IDAV GR++G PI+EL+ RV+ L+        + YERGDSSTGS+AH+EER+ ELDSSQK+++EMINGMS+DF
Subjt:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAK---ATRINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF

Query:  RATLDV------------------------------------------VRNEIADV--------------------------------------------
        RATLDV                                          + N I D+                                            
Subjt:  RATLDV------------------------------------------VRNEIADV--------------------------------------------

Query:  --------------------------SARALNH-------GRRPSYTNRGSKNSHRHTQRQNDYLTCPVTLKMRDVIQVPHLEEIRTIVQVLQRSEGEID
                                    R L H       GRR SY N+  K S   T + N  LTC  TLK+RDVIQVPHLEE+ T  QVL +     D
Subjt:  --------------------------SARALNH-------GRRPSYTNRGSKNSHRHTQRQNDYLTCPVTLKMRDVIQVPHLEEIRTIVQVLQRSEGEID

Query:  DLVVIVGPFNQTPGTQGEDRTPKTLTVVPLPVSYV
         L+ IV P N+   T GED+  +   +V L  SY+
Subjt:  DLVVIVGPFNQTPGTQGEDRTPKTLTVVPLPVSYV

A0A5A7U607 Retrotrans_gag domain-containing protein8.7e-3566.67Show/hide
Query:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAK---ATRINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF
        MLYL+E  D++R+LE R+EEIS+K + IDAV GR++G PI+ELL RV+ L+        +NYERGDSSTGS+AH+EER+ ELDSSQK+++EMINGMS+DF
Subjt:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAK---ATRINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF

Query:  RATLDVVRNEIADVSAR
        RATLDVVRNEIADV+AR
Subjt:  RATLDVVRNEIADVSAR

A0A5D3BRZ6 Reverse transcriptase1.1e-3465.81Show/hide
Query:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAKAT---RINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF
        MLYL+E  D++R+LE R+EEIS+K + IDAV GR++G PI+EL+ RV+ L+        +NYERGDSSTGS+AH+EER+ ELDSSQK+++EMINGMS+DF
Subjt:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAKAT---RINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF

Query:  RATLDVVRNEIADVSAR
        RATLDVVRNEIADV+AR
Subjt:  RATLDVVRNEIADVSAR

A0A5D3C4R1 Reverse transcriptase1.1e-3465.81Show/hide
Query:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAKAT---RINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF
        MLYL+E  D++R+LE R+EEIS+K + IDAV GR++G PI+EL+ RV+ L+        +NYERGDSSTGS+AH+EER+ ELDSSQK+++EMINGMS+DF
Subjt:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAKAT---RINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF

Query:  RATLDVVRNEIADVSAR
        RATLDVVRNEIADV+AR
Subjt:  RATLDVVRNEIADVSAR

A0A5D3DQ20 Retrotrans_gag domain-containing protein1.1e-3465.81Show/hide
Query:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAKAT---RINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF
        MLYL+E  D++R+LE R+EEIS+K + IDAV GR++G PI+EL+ RV+ L+        +NYERGDSSTGS+AH+EER+ ELDSSQK+++EMINGMS+DF
Subjt:  MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAKAT---RINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDF

Query:  RATLDVVRNEIADVSAR
        RATLDVVRNEIADV+AR
Subjt:  RATLDVVRNEIADVSAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTACCTGATGGAATTTTCGGACACCGTCCGCTTCTTGGAAGGTCGGATTGAAGAAATTTCCAAGAAAGCCGACGCTATCGATGCGGTGACCGGTCGCCTCGACGG
ATTACCTATAAAGGAGTTGTTGATAAGAGTTAACACTTTAAAGGCAAAGGCTACAAGAATAAACTACGAGCGTGGGGACAGTTCAACGGGCTCTATTGCCCACGTAGAGG
AACGGATTGGCGAGCTAGATAGCTCCCAAAAGTCGATTGTCGAGATGATAAACGGCATGTCAAAGGATTTTCGTGCCACCCTTGATGTCGTCAGAAATGAGATCGCAGAC
GTGAGCGCGAGGGCCTTAAACCATGGGCGAAGACCAAGCTATACGAACAGAGGGTCCAAGAACTCTCATCGGCATACGCAGCGACAGAACGACTATTTGACCTGTCCAGT
GACTCTCAAGATGCGAGACGTCATCCAAGTTCCTCATCTAGAGGAAATAAGAACAATCGTGCAAGTTCTCCAAAGGTCGGAGGGGGAGATAGACGATCTAGTGGTGATCG
TAGGCCCTTTCAATCAAACACCGGGAACACAGGGCGAAGACAGAACCCCCAAAACCCTCACAGTCGTCCCCTTGCCTGTTTCATATGTAAGGGGCCGCACATGGCGAGAG
AATGTCCGAATCGAACCACCTTCAACGCCTTTTAGGCTGCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTACCTGATGGAATTTTCGGACACCGTCCGCTTCTTGGAAGGTCGGATTGAAGAAATTTCCAAGAAAGCCGACGCTATCGATGCGGTGACCGGTCGCCTCGACGG
ATTACCTATAAAGGAGTTGTTGATAAGAGTTAACACTTTAAAGGCAAAGGCTACAAGAATAAACTACGAGCGTGGGGACAGTTCAACGGGCTCTATTGCCCACGTAGAGG
AACGGATTGGCGAGCTAGATAGCTCCCAAAAGTCGATTGTCGAGATGATAAACGGCATGTCAAAGGATTTTCGTGCCACCCTTGATGTCGTCAGAAATGAGATCGCAGAC
GTGAGCGCGAGGGCCTTAAACCATGGGCGAAGACCAAGCTATACGAACAGAGGGTCCAAGAACTCTCATCGGCATACGCAGCGACAGAACGACTATTTGACCTGTCCAGT
GACTCTCAAGATGCGAGACGTCATCCAAGTTCCTCATCTAGAGGAAATAAGAACAATCGTGCAAGTTCTCCAAAGGTCGGAGGGGGAGATAGACGATCTAGTGGTGATCG
TAGGCCCTTTCAATCAAACACCGGGAACACAGGGCGAAGACAGAACCCCCAAAACCCTCACAGTCGTCCCCTTGCCTGTTTCATATGTAAGGGGCCGCACATGGCGAGAG
AATGTCCGAATCGAACCACCTTCAACGCCTTTTAGGCTGCCTTAA
Protein sequenceShow/hide protein sequence
MLYLMEFSDTVRFLEGRIEEISKKADAIDAVTGRLDGLPIKELLIRVNTLKAKATRINYERGDSSTGSIAHVEERIGELDSSQKSIVEMINGMSKDFRATLDVVRNEIAD
VSARALNHGRRPSYTNRGSKNSHRHTQRQNDYLTCPVTLKMRDVIQVPHLEEIRTIVQVLQRSEGEIDDLVVIVGPFNQTPGTQGEDRTPKTLTVVPLPVSYVRGRTWRE
NVRIEPPSTPFRLP