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PI0019120 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019120
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr07:14747716..14748404
RNA-Seq ExpressionPI0019120
SyntenyPI0019120
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052189.1 DNA-binding protein HEXBP-like [Cucumis melo var. makuwa]1.3e-2560.45Show/hide
Query:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTAR---------------QKEGEANVAHSKRFQKGLSS
        M+LVIA L FVL+EECLP  T+N SQ  RDAYDR TKANDK C+YIL SMS ILSKKHE MVTAR               Q + EANVAHS+RF      
Subjt:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTAR---------------QKEGEANVAHSKRFQKGLSS

Query:  GTKSAPSFSGTKKIQKKKGGKGKGPTAAVKEKWK
            APS SG+KKIQK+KGGKGKG T A K K K
Subjt:  GTKSAPSFSGTKKIQKKKGGKGKGPTAAVKEKWK

KAA0054278.1 gag/pol protein [Cucumis melo var. makuwa]3.9e-2558.96Show/hide
Query:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTAR---------------QKEGEANVAHSKRFQKGLSS
        M+LVIADLRFVL+EEC P  T+N  Q+ RDAYDR TKANDK  +YIL  +S ILSKKHE MVTAR               Q + EANVAHS+RF      
Subjt:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTAR---------------QKEGEANVAHSKRFQKGLSS

Query:  GTKSAPSFSGTKKIQKKKGGKGKGPTAAVKEKWK
            APS SG+KKIQK+KGGKGKGPT AV+ K K
Subjt:  GTKSAPSFSGTKKIQKKKGGKGKGPTAAVKEKWK

KAA0058245.1 DNA-binding protein HEXBP-like [Cucumis melo var. makuwa]3.3e-2458.96Show/hide
Query:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTAR---------------QKEGEANVAHSKRFQKGLSS
        M+LVIADLRFVL+EEC P  T+  SQ+ RD YDR TKANDK  V+IL SMS+ILSKKHE MVTAR               Q + EANVAHSKRF      
Subjt:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTAR---------------QKEGEANVAHSKRFQKGLSS

Query:  GTKSAPSFSGTKKIQKKKGGKGKGPTAAVKEKWK
            APS SG++KIQK+K GKGKGPT AV+ K K
Subjt:  GTKSAPSFSGTKKIQKKKGGKGKGPTAAVKEKWK

TYK11939.1 gag/pol protein [Cucumis melo var. makuwa]5.7e-2454.14Show/hide
Query:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTA-----------------------------------R
        MVLVIADLRFVL+EE  P  TQN S++ RDAYDR TK NDK  +YIL SMS ILSKKHE MVTA                                    
Subjt:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTA-----------------------------------R

Query:  QKEGEANVAHSKRFQKGLSSGTKSAPSFSGTKKIQKKKGGKGKGPTAAV--KEKWKV
        QKEGE NVAHS+RF          APS SG+KKI+KKKGGKGKGPTAA   KEK KV
Subjt:  QKEGEANVAHSKRFQKGLSSGTKSAPSFSGTKKIQKKKGGKGKGPTAAV--KEKWKV

TYK14981.1 DNA-binding protein HEXBP-like [Cucumis melo var. makuwa]3.9e-2558.96Show/hide
Query:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTAR---------------QKEGEANVAHSKRFQKGLSS
        M+LVIADLRFVL+EEC P  T+N  Q+ RDAYDR TKANDK  +YIL  +S ILSKKHE MVTAR               Q + EANVAHS+RF      
Subjt:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTAR---------------QKEGEANVAHSKRFQKGLSS

Query:  GTKSAPSFSGTKKIQKKKGGKGKGPTAAVKEKWK
            APS SG+KKIQK+KGGKGKGPT AV+ K K
Subjt:  GTKSAPSFSGTKKIQKKKGGKGKGPTAAVKEKWK

TrEMBL top hitse value%identityAlignment
A0A5A7UH21 Gag/pol protein1.9e-2558.96Show/hide
Query:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTAR---------------QKEGEANVAHSKRFQKGLSS
        M+LVIADLRFVL+EEC P  T+N  Q+ RDAYDR TKANDK  +YIL  +S ILSKKHE MVTAR               Q + EANVAHS+RF      
Subjt:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTAR---------------QKEGEANVAHSKRFQKGLSS

Query:  GTKSAPSFSGTKKIQKKKGGKGKGPTAAVKEKWK
            APS SG+KKIQK+KGGKGKGPT AV+ K K
Subjt:  GTKSAPSFSGTKKIQKKKGGKGKGPTAAVKEKWK

A0A5A7UX93 DNA-binding protein HEXBP-like1.6e-2458.96Show/hide
Query:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTAR---------------QKEGEANVAHSKRFQKGLSS
        M+LVIADLRFVL+EEC P  T+  SQ+ RD YDR TKANDK  V+IL SMS+ILSKKHE MVTAR               Q + EANVAHSKRF      
Subjt:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTAR---------------QKEGEANVAHSKRFQKGLSS

Query:  GTKSAPSFSGTKKIQKKKGGKGKGPTAAVKEKWK
            APS SG++KIQK+K GKGKGPT AV+ K K
Subjt:  GTKSAPSFSGTKKIQKKKGGKGKGPTAAVKEKWK

A0A5D3BH30 DNA-binding protein HEXBP-like6.5e-2660.45Show/hide
Query:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTAR---------------QKEGEANVAHSKRFQKGLSS
        M+LVIA L FVL+EECLP  T+N SQ  RDAYDR TKANDK C+YIL SMS ILSKKHE MVTAR               Q + EANVAHS+RF      
Subjt:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTAR---------------QKEGEANVAHSKRFQKGLSS

Query:  GTKSAPSFSGTKKIQKKKGGKGKGPTAAVKEKWK
            APS SG+KKIQK+KGGKGKG T A K K K
Subjt:  GTKSAPSFSGTKKIQKKKGGKGKGPTAAVKEKWK

A0A5D3CNT6 Gag/pol protein2.7e-2454.14Show/hide
Query:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTA-----------------------------------R
        MVLVIADLRFVL+EE  P  TQN S++ RDAYDR TK NDK  +YIL SMS ILSKKHE MVTA                                    
Subjt:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTA-----------------------------------R

Query:  QKEGEANVAHSKRFQKGLSSGTKSAPSFSGTKKIQKKKGGKGKGPTAAV--KEKWKV
        QKEGE NVAHS+RF          APS SG+KKI+KKKGGKGKGPTAA   KEK KV
Subjt:  QKEGEANVAHSKRFQKGLSSGTKSAPSFSGTKKIQKKKGGKGKGPTAAV--KEKWKV

A0A5D3CT18 DNA-binding protein HEXBP-like1.9e-2558.96Show/hide
Query:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTAR---------------QKEGEANVAHSKRFQKGLSS
        M+LVIADLRFVL+EEC P  T+N  Q+ RDAYDR TKANDK  +YIL  +S ILSKKHE MVTAR               Q + EANVAHS+RF      
Subjt:  MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTAR---------------QKEGEANVAHSKRFQKGLSS

Query:  GTKSAPSFSGTKKIQKKKGGKGKGPTAAVKEKWK
            APS SG+KKIQK+KGGKGKGPT AV+ K K
Subjt:  GTKSAPSFSGTKKIQKKKGGKGKGPTAAVKEKWK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTAGTTATCGCTGATCTACGCTTCGTTTTAGTGGAGGAATGTCTTCCTTCCCTTACTCAAAATGAATCCCAGACTGCTAGGGATGCATATGACCGCTGCACAAA
GGCCAATGACAAGACATGCGTCTACATCTTGGACAGTATGTCTGAGATACTGAGCAAGAAACATGAGACCATGGTCACTGCACGTCAGAAAGAAGGAGAGGCAAATGTTG
CCCATTCCAAGAGGTTTCAGAAGGGTTTATCCTCTGGAACCAAGTCTGCACCTTCATTTTCTGGGACTAAGAAAATCCAGAAGAAGAAAGGAGGGAAGGGGAAAGGTCCT
ACTGCTGCTGTAAAAGAAAAATGGAAGGTTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCTAGTTATCGCTGATCTACGCTTCGTTTTAGTGGAGGAATGTCTTCCTTCCCTTACTCAAAATGAATCCCAGACTGCTAGGGATGCATATGACCGCTGCACAAA
GGCCAATGACAAGACATGCGTCTACATCTTGGACAGTATGTCTGAGATACTGAGCAAGAAACATGAGACCATGGTCACTGCACGTCAGAAAGAAGGAGAGGCAAATGTTG
CCCATTCCAAGAGGTTTCAGAAGGGTTTATCCTCTGGAACCAAGTCTGCACCTTCATTTTCTGGGACTAAGAAAATCCAGAAGAAGAAAGGAGGGAAGGGGAAAGGTCCT
ACTGCTGCTGTAAAAGAAAAATGGAAGGTTGATTGA
Protein sequenceShow/hide protein sequence
MVLVIADLRFVLVEECLPSLTQNESQTARDAYDRCTKANDKTCVYILDSMSEILSKKHETMVTARQKEGEANVAHSKRFQKGLSSGTKSAPSFSGTKKIQKKKGGKGKGP
TAAVKEKWKVD