CuGenDBv2

Gene ID	PI0019125
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	50S ribosomal protein L6, putative
Genome location	chr08:21640804..21641112
RNA-Seq Expression	PI0019125
Synteny	PI0019125
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR000702 - Ribosomal protein L6 IPR002358 - Ribosomal protein L6, conserved site IPR019906 - Ribosomal protein L6, bacterial-type IPR020040 - Ribosomal protein L6, alpha-beta domain IPR036789 - Ribosomal protein L6, alpha-beta domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

PON38569.1 Ribosomal protein [Parasponia andersonii]

3.6e-48

95.1

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Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEA+FFRFLKIVGVGYKARAE+AGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI KQRVHQFAAAVRSCKPPEVYKGKGIMYIDEV+K+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

XP_004143514.1 uncharacterized protein LOC101220210 [Cucumis sativus]

3.3e-49

97.06

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Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI KQRVHQFAAAVRSCKPPEVYKGKGIMY+DEV+KRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

XP_008440709.1 PREDICTED: 60S ribosomal protein L6, mitochondrial [Cucumis melo]

1.2e-48

97.06

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Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI K RVHQFAAAVRSCKPPEVYKGKGIMYIDEV+KRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

XP_022158420.1 uncharacterized protein LOC111024915 [Momordica charantia]

6.2e-48

96.08

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Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKN+VVCCTGI KQRVHQFAAAVRSCKPPEVYKGKGIMYI+EVVK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

XP_022950399.1 uncharacterized protein LOC111453510 [Cucurbita moschata]

5.6e-49

97.06

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Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI KQRVHQFAAAVRSCKPPEVYKGKGIMYIDEV+K+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJ40 Ribosomal_L6 domain-containing protein

1.6e-49

97.06

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Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI KQRVHQFAAAVRSCKPPEVYKGKGIMY+DEV+KRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

A0A1S3B2D0 60S ribosomal protein L6, mitochondrial

6.0e-49

97.06

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Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI K RVHQFAAAVRSCKPPEVYKGKGIMYIDEV+KRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

A0A5D3CL55 60S ribosomal protein L6

6.0e-49

97.06

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Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI K RVHQFAAAVRSCKPPEVYKGKGIMYIDEV+KRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

A0A6J1GFP3 uncharacterized protein LOC111453510

2.7e-49

97.06

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Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI KQRVHQFAAAVRSCKPPEVYKGKGIMYIDEV+K+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

A0A6J1IQJ4 uncharacterized protein LOC111478518

2.7e-49

97.06

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Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI KQRVHQFAAAVRSCKPPEVYKGKGIMYIDEV+K+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

SwissProt top hits

e value

%identity

Alignment

B3WAK3 50S ribosomal protein L6

2.4e-18

53.19

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Query:  LKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK
        +K+VGVGY  RA+  G  L L +GYSH VE+T P  V V       +  +GI KQ V QFAA VRS + PE YKGKGI Y+DE V+RK+GK  K
Subjt:  LKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK

P26861 60S ribosomal protein L6, mitochondrial

1.1e-34

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Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFF FL+I+GVGYKA   A G +LYLKLG+SHE+ L V P+VRVFC K N++CCTG+  Q+V QFAA V+SCKPPEVYKGKGI Y +E++ +KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Q034Z8 50S ribosomal protein L6

2.4e-18

53.19

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Query:  LKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK
        +K+VGVGY  RA+  G  L L +GYSH VE+T P  V V       +  +GI KQ V QFAA VRS + PE YKGKGI Y+DE V+RK+GK  K
Subjt:  LKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK

Q2JQN4 50S ribosomal protein L6

2.4e-18

48.98

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Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK
        F R L++VGVGY  RA   G  L L +GYSH VE+  PP +++    NNV+  +GI K+ V   AA +R+ +PPE YKGKGI Y+ E V+RK GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK

Q38US6 50S ribosomal protein L6

1.1e-18

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Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK
        F + L ++GVGY  RA+  G+ L L +GYSH VE+  P  V V    N  +  +GI KQ+V QFAA +R  +PPE YKGKGI Y DE V+RK+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK

Arabidopsis top hits

e value

%identity

Alignment

AT1G05190.1 Ribosomal protein L6 family

3.2e-18

44.9

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Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK
        F + L +VGVGY+A  +  G+ L L LG+SH V++ +P +++V   +N  +  +G  K  + QFAA VR  +PPE YKGKG+ Y DE+V+RK+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK

AT2G18400.1 ribosomal protein L6 family protein

9.2e-50

92.16

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Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK
        MEAKFFRFLKIVGVGYKARAE AGR LYLKLGYSHEVEL VPPAVRVFCFKNNVVCCTGI KQRVHQFAA VRSCKPPE YKGKGIMY DEVVK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKK

Query:  SK
        SK
Subjt:  SK

Sequences

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CDS sequence

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ATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGGTACAAAGCCAGAGCCGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGCCATGAAGT
TGAACTAACCGTTCCGCCAGCTGTTCGCGTTTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTCACAAACAAAGGGTACACCAATTTGCTGCTGCAGTTCGTA
GCTGTAAGCCACCAGAAGTATACAAAGGCAAGGGCATCATGTATATCGATGAGGTCGTAAAGAGGAAACAAGGAAAGAAGTCTAAATAA

mRNA sequence

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Protein sequence

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MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIHKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVVKRKQGKKSK

PI0019125 (gene) of Melon (PI 482460) v1 genome