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PI0019135 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019135
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDNA-(apurinic or apyrimidinic site) lyase
Genome locationchr03:12187063..12187533
RNA-Seq ExpressionPI0019135
SyntenyPI0019135
Gene Ontology termsGO:0006285 - base-excision repair, AP site formation (biological process)
GO:0006289 - nucleotide-excision repair (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003684 - damaged DNA binding (molecular function)
GO:0034039 - 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity (molecular function)
GO:0140078 - class I DNA-(apurinic or apyrimidinic site) endonuclease activity (molecular function)
InterPro domainsIPR012904 - 8-oxoguanine DNA glycosylase, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055472.1 N-glycosylase/DNA lyase OGG1 isoform X2 [Cucumis melo var. makuwa]5.2e-4697.14Show/hide
Query:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
        MPSLSFKPLLLMTKR KPT PSTPS KPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
Subjt:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK

Query:  QTNPL
        QTNPL
Subjt:  QTNPL
XP_004149809.2 N-glycosylase/DNA lyase OGG1 [Cucumis sativus]5.2e-4697.12Show/hide
Query:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
        MPSLSFKPLLLMTKRLKPTPPSTPS KPSPPPPSPPTPQLSHSKPTTVS+HHSSKNPNKTL LLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
Subjt:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK

Query:  QTNP
        QTNP
Subjt:  QTNP
XP_008466739.1 PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Cucumis melo]5.2e-4697.14Show/hide
Query:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
        MPSLSFKPLLLMTKR KPT PSTPS KPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
Subjt:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK

Query:  QTNPL
        QTNPL
Subjt:  QTNPL
XP_016903621.1 PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X2 [Cucumis melo]5.2e-4697.14Show/hide
Query:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
        MPSLSFKPLLLMTKR KPT PSTPS KPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
Subjt:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK

Query:  QTNPL
        QTNPL
Subjt:  QTNPL
XP_016903622.1 PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X3 [Cucumis melo]5.2e-4697.14Show/hide
Query:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
        MPSLSFKPLLLMTKR KPT PSTPS KPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
Subjt:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK

Query:  QTNPL
        QTNPL
Subjt:  QTNPL
TrEMBL top hitse value%identityAlignment
A0A0A0KIU8 DNA-(apurinic or apyrimidinic site) lyase2.5e-4697.12Show/hide
Query:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
        MPSLSFKPLLLMTKRLKPTPPSTPS KPSPPPPSPPTPQLSHSKPTTVS+HHSSKNPNKTL LLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
Subjt:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK

Query:  QTNP
        QTNP
Subjt:  QTNP
A0A1S3CS00 DNA-(apurinic or apyrimidinic site) lyase2.5e-4697.14Show/hide
Query:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
        MPSLSFKPLLLMTKR KPT PSTPS KPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
Subjt:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK

Query:  QTNPL
        QTNPL
Subjt:  QTNPL
A0A1S4E5X6 N-glycosylase/DNA lyase OGG1 isoform X32.5e-4697.14Show/hide
Query:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
        MPSLSFKPLLLMTKR KPT PSTPS KPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
Subjt:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK

Query:  QTNPL
        QTNPL
Subjt:  QTNPL
A0A5A7UI18 DNA-(apurinic or apyrimidinic site) lyase2.5e-4697.14Show/hide
Query:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
        MPSLSFKPLLLMTKR KPT PSTPS KPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
Subjt:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK

Query:  QTNPL
        QTNPL
Subjt:  QTNPL
A0A5D3CBS3 DNA-(apurinic or apyrimidinic site) lyase2.5e-4697.14Show/hide
Query:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
        MPSLSFKPLLLMTKR KPT PSTPS KPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK
Subjt:  MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWK

Query:  QTNPL
        QTNPL
Subjt:  QTNPL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTCATTGTCATTCAAACCCCTTCTTCTAATGACGAAGAGGCTCAAACCCACTCCACCCTCCACTCCCTCCGCCAAGCCATCGCCACCGCCGCCGTCTCCTCCTAC
CCCTCAACTCTCCCATTCAAAACCAACCACTGTCTCCATCCACCACTCATCCAAAAACCCAAACAAAACCCTAACCCTCCTCAAATCCCCCCAATCCCCATCATCCTCCA
ACTGGGTCTCTCTAAATCTCACCAGATCAGACCTCTCTTTGCCTCTCACTTTCCCCACCGGCCAAACCTTCCGCTGGAAACAAACCAACCCCTTGAGTTCACCGGCGTTG
TTGGTTCTCATCTCATCTCTCTCAACCATCTTCCAAACGGCGACGTTTCATATTGCCTTCACTTTTCTTCTACATCCTCCTCCTCCTCCGCCGCCGCCAGATTGGCGTTA
CTTGATTTCCTCAACGCCGGCATCTCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTTCATTGTCATTCAAACCCCTTCTTCTAATGACGAAGAGGCTCAAACCCACTCCACCCTCCACTCCCTCCGCCAAGCCATCGCCACCGCCGCCGTCTCCTCCTAC
CCCTCAACTCTCCCATTCAAAACCAACCACTGTCTCCATCCACCACTCATCCAAAAACCCAAACAAAACCCTAACCCTCCTCAAATCCCCCCAATCCCCATCATCCTCCA
ACTGGGTCTCTCTAAATCTCACCAGATCAGACCTCTCTTTGCCTCTCACTTTCCCCACCGGCCAAACCTTCCGCTGGAAACAAACCAACCCCTTGAGTTCACCGGCGTTG
TTGGTTCTCATCTCATCTCTCTCAACCATCTTCCAAACGGCGACGTTTCATATTGCCTTCACTTTTCTTCTACATCCTCCTCCTCCTCCGCCGCCGCCAGATTGGCGTTA
CTTGATTTCCTCAACGCCGGCATCTCCCTGA
Protein sequenceShow/hide protein sequence
MPSLSFKPLLLMTKRLKPTPPSTPSAKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPLSSPAL
LVLISSLSTIFQTATFHIAFTFLLHPPPPPPPPDWRYLISSTPASP