CuGenDBv2

Gene ID	PI0019143
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr11:15991381..15991965
RNA-Seq Expression	PI0019143
Synteny	PI0019143
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

7.3e-66

74.32

Show/hide

Query:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG
        NVAE NGAVIDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS+SG
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

7.3e-66

74.32

Show/hide

Query:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG
        NVAE NGAVIDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS+SG
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

7.3e-66

74.32

Show/hide

Query:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG
        NVAE NGAVIDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS+SG
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

7.3e-66

74.32

Show/hide

Query:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA+QTVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL++MV F
Subjt:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG
        NVAE NGAVIDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS+SG
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

7.3e-66

74.32

Show/hide

Query:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG
        NVAE NGAVIDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS+SG
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

3.5e-66

74.32

Show/hide

Query:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG
        NVAE NGAVIDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS+SG
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG

A0A5A7TU93 Gag/pol protein

3.5e-66

74.32

Show/hide

Query:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG
        NVAE NGAVIDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS+SG
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG

A0A5A7TWB9 Gag/pol protein

3.5e-66

74.32

Show/hide

Query:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG
        NVAE NGAVIDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS+SG
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG

A0A5A7V6N0 Gag/pol protein

3.5e-66

74.32

Show/hide

Query:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA+QTVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL++MV F
Subjt:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG
        NVAE NGAVIDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS+SG
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG

A0A5D3CPJ6 Gag/pol protein

3.5e-66

74.32

Show/hide

Query:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ ++RW KANEKAR YILAS+S++L+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG
        NVAE NGAVIDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQ+F+ LMK KGQK GEANVA S ++F +GS+SG
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHS-KRFQKGSSSG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAGGAATGTCCTCATTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAG
TATGTCTGACATACTGAGCAAGAAACATGAGTCTATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCATGAGG
CTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATT
GATGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTTCGAAGAGCTTCCTTCAGTTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCT
TAACGAGTTGCAGAGTTTTCAGCCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGACTTC
TGAAACCAAGTCGCACCTTCATCTTCTGGGACTAA

mRNA sequence

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Protein sequence

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MEECPHSPVRNASQTVRDAHDRWTKANEKARVYILASMSDILSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVI
DEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQSFQPLMKNKGQKEGEANVAHSKRFQKGSSSGLLKPSRTFIFWD

PI0019143 (gene) of Melon (PI 482460) v1 genome