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PI0019158 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019158
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionprotein LHCP TRANSLOCATION DEFECT
Genome locationchr06:26021532..26023568
RNA-Seq ExpressionPI0019158
SyntenyPI0019158
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0090391 - granum assembly (biological process)
GO:0009570 - chloroplast stroma (cellular component)
GO:0009941 - chloroplast envelope (cellular component)
InterPro domainsIPR036770 - Ankyrin repeat-containing domain superfamily
IPR044242 - Protein LHCP TRANSLOCATION DEFECT-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152919.1 protein LHCP TRANSLOCATION DEFECT [Cucumis sativus]8.5e-8795.83Show/hide
Query:  MASLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT+SINLTPRSF SRPPFKLGSHFLGLQSNLRW+SPV+IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTA+DRA+NEEIKDFILNFSAKKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA

XP_008463435.1 PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo]5.5e-8695.83Show/hide
Query:  MASLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRSF SRPPFKL SHFLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAIDRALNEEIKDFIL FSAKKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA

XP_022932181.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]2.2e-7991.07Show/hide
Query:  MASLSCT-TSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P S  SRPP KLGS FLGLQSNLRWVSP+AIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRA N+EIKDFILNFS +K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKK

XP_022985270.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]4.5e-8091.67Show/hide
Query:  MASLSCT-TSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P SF SRPP KLGS FLGLQSNLRWVSP+AIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRA N+EIKDFILNFS +K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKK

XP_038903413.1 protein LHCP TRANSLOCATION DEFECT [Benincasa hispida]6.8e-8494.64Show/hide
Query:  MASLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT S+NLTPRSF SRPPFKL S FLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRA NEEIKDFILN S K A
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA

TrEMBL top hitse value%identityAlignment
A0A0A0L309 ANK_REP_REGION domain-containing protein4.1e-8795.83Show/hide
Query:  MASLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT+SINLTPRSF SRPPFKLGSHFLGLQSNLRW+SPV+IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTA+DRA+NEEIKDFILNFSAKKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA

A0A1S3CJ75 protein LHCP TRANSLOCATION DEFECT2.7e-8695.83Show/hide
Query:  MASLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRSF SRPPFKL SHFLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAIDRALNEEIKDFIL FSAKKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA

A0A5D3BT07 Protein LHCP TRANSLOCATION DEFECT2.7e-8695.83Show/hide
Query:  MASLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRSF SRPPFKL SHFLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAIDRALNEEIKDFIL FSAKKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA

A0A6J1EVN2 protein LHCP TRANSLOCATION DEFECT1.1e-7991.07Show/hide
Query:  MASLSCT-TSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P S  SRPP KLGS FLGLQSNLRWVSP+AIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRA N+EIKDFILNFS +K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKK

A0A6J1JAV9 protein LHCP TRANSLOCATION DEFECT2.2e-8091.67Show/hide
Query:  MASLSCT-TSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P SF SRPP KLGS FLGLQSNLRWVSP+AIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRA N+EIKDFILNFS +K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKK

SwissProt top hitse value%identityAlignment
A2YLX7 Protein LHCP TRANSLOCATION DEFECT2.4e-4760.57Show/hide
Query:  MASLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSP---VAIGPSNGS---RATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV
        MAS+ CT  ++    S ++    +         + L W+ P    A+ P++ S     TC+F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAV
Subjt:  MASLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSP---VAIGPSNGS---RATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV

Query:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA
        EGTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA  ++ ++FIL F+A  A
Subjt:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA

A3BKF2 Protein LHCP TRANSLOCATION DEFECT2.4e-4760.57Show/hide
Query:  MASLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSP---VAIGPSNGS---RATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV
        MAS+ CT  ++    S ++    +         + L W+ P    A+ P++ S     TC+F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAV
Subjt:  MASLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSP---VAIGPSNGS---RATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV

Query:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA
        EGTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA  ++ ++FIL F+A  A
Subjt:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA

Q8VY88 Protein LHCP TRANSLOCATION DEFECT3.6e-5666.27Show/hide
Query:  SLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        S SC  S+  +  S TS  P  L S FLG ++    + P  +GPSNGSR TCWF   +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY K
Subjt:  SLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA
        MEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA+Y VKD DGRTAIDRA +EEI+D IL +S +KA
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA

Arabidopsis top hitse value%identityAlignment
AT1G50900.1 Ankyrin repeat family protein2.6e-5766.27Show/hide
Query:  SLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        S SC  S+  +  S TS  P  L S FLG ++    + P  +GPSNGSR TCWF   +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY K
Subjt:  SLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA
        MEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA+Y VKD DGRTAIDRA +EEI+D IL +S +KA
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCCTCTCTTGTACTACCTCCATTAATCTCACCCCAAGATCCTTCACTTCTCGCCCCCCATTCAAATTGGGATCCCATTTTCTTGGTCTTCAGTCCAACCTCCG
ATGGGTCTCACCCGTCGCCATTGGACCCTCCAATGGCTCTAGAGCAACTTGCTGGTTCAATTTAAGGCAAAATGCCGAAGGCGCAGGCATTTATGGCAGCCAGTCCCGAG
ATGATTTCAACAGAGATGATGTTGAGCAGTATTTTAACTATATGGGAATGCTGGCTGTAGAAGGAACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCA
GTGGACATTTTGTTGATGCTGGCTGCCTCAGAAGGAGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGC
CATTGATAGAGCACTTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCTGCAAAAAAAGCATGA
mRNA sequenceShow/hide mRNA sequence
CACCGGATACCGAGTGGATGGATAGGACCTCCAAGATTGCGAGAGCAAAAGCTCAGCCAAAACTTGCACAAACTCACCCATGGCTTCCCTCTCTTGTACTACCTCCATTA
ATCTCACCCCAAGATCCTTCACTTCTCGCCCCCCATTCAAATTGGGATCCCATTTTCTTGGTCTTCAGTCCAACCTCCGATGGGTCTCACCCGTCGCCATTGGACCCTCC
AATGGCTCTAGAGCAACTTGCTGGTTCAATTTAAGGCAAAATGCCGAAGGCGCAGGCATTTATGGCAGCCAGTCCCGAGATGATTTCAACAGAGATGATGTTGAGCAGTA
TTTTAACTATATGGGAATGCTGGCTGTAGAAGGAACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGTTGATGCTGGCTGCCTCAG
AAGGAGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGCACTTAATGAAGAAATTAAG
GATTTTATTCTTAATTTTTCTGCAAAAAAAGCATGATTTTGGTCGGAAGTTGCTCTGTTTTGATAGGTTTTAGAAAGAGGTTTAAGATTTGTATTTTCACTGCATTCTGA
TGTTAATCATATTGGGTTAAAATTTATGCTTGTTTTTATCAATTAGGGAATGGCTTGGAGATGTAAAATCTTGTTAATAGATGTTTAGTGTTTTGATGTTTACGTTATCT
TTAAAATTGTGTATTTAATCTTTTAAAAGTGATGGAAATTGAATTATTAAGGCTGTTTTGCAACTTTTTTTTTT
Protein sequenceShow/hide protein sequence
MASLSCTTSINLTPRSFTSRPPFKLGSHFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHP
VDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRALNEEIKDFILNFSAKKA