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PI0019171 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019171
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionnuclear transcription factor Y subunit C-1-like
Genome locationchr07:4841291..4841644
RNA-Seq ExpressionPI0019171
SyntenyPI0019171
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146566.1 nuclear transcription factor Y subunit C-3 [Cucumis sativus]3.9e-5494.96Show/hide
Query:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAG YSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELT+RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  T--AAAGDLGESETISVGC
           AA GDLGESETISVGC
Subjt:  T--AAAGDLGESETISVGC

XP_008452022.1 PREDICTED: nuclear transcription factor Y subunit C-1-like [Cucumis melo]1.0e-5494.87Show/hide
Query:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAG YSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELT+RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  TAAAGDLGESETISVGC
         A AGD+GESE ISVGC
Subjt:  TAAAGDLGESETISVGC

XP_022985461.1 nuclear transcription factor Y subunit C-4-like [Cucurbita maxima]3.2e-4884.43Show/hide
Query:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAG YSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELFIEELT+RSWMIAM SKKRMLHKEDVASAILATD+FDFLIGLIF+ET
Subjt:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  T-------AAAGDLGESETISV
        T       +AAGDL ESET+S+
Subjt:  T-------AAAGDLGESETISV

XP_023552994.1 nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo]2.2e-4987.39Show/hide
Query:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAG YSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELFIEELT+RSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET
Subjt:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  T----AAAGDLGESETISV
        T    +AAGDL ESET+S+
Subjt:  T----AAAGDLGESETISV

XP_038877432.1 nuclear transcription factor Y subunit C-1-like [Benincasa hispida]5.2e-5187.8Show/hide
Query:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAG YSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELT+RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  ------TAAAGDLGESETISVGC
               AA GDL ESE +S+ C
Subjt:  ------TAAAGDLGESETISVGC

TrEMBL top hitse value%identityAlignment
A0A0A0KZN6 CBFD_NFYB_HMF domain-containing protein1.9e-5494.96Show/hide
Query:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAG YSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELT+RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  T--AAAGDLGESETISVGC
           AA GDLGESETISVGC
Subjt:  T--AAAGDLGESETISVGC

A0A1S3BSA0 nuclear transcription factor Y subunit C-1-like4.9e-5594.87Show/hide
Query:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAG YSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELT+RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  TAAAGDLGESETISVGC
         A AGD+GESE ISVGC
Subjt:  TAAAGDLGESETISVGC

A0A5A7TSI3 Nuclear transcription factor Y subunit C-1-like4.9e-5594.87Show/hide
Query:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAG YSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELT+RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
Subjt:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  TAAAGDLGESETISVGC
         A AGD+GESE ISVGC
Subjt:  TAAAGDLGESETISVGC

A0A6J1EZM2 nuclear transcription factor Y subunit C-4-like4.5e-4884.17Show/hide
Query:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAG YSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELF+EELT+RSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET
Subjt:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  T-----AAAGDLGESETISV
        T     +AA +L ESET+S+
Subjt:  T-----AAAGDLGESETISV

A0A6J1J883 nuclear transcription factor Y subunit C-4-like1.5e-4884.43Show/hide
Query:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET
        MRQAG YSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELFIEELT+RSWMIAM SKKRMLHKEDVASAILATD+FDFLIGLIF+ET
Subjt:  MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET

Query:  T-------AAAGDLGESETISV
        T       +AAGDL ESET+S+
Subjt:  T-------AAAGDLGESETISV

SwissProt top hitse value%identityAlignment
A6BLW4 Nuclear transcription factor Y subunit C-25.9e-2162.2Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE
        H LPLARIKKIM K+ E+V+MIS EAP++F+KACELFI ELT RSW+ A ++K+R L + DVA+AI  TDVFDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE

Q655V5 Nuclear transcription factor Y subunit C-41.0e-2060.76Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI
        HSLPLARIKKIM K+ E+V+MIS EAP++F+KACE+FI ELT RSWM   ++K+R L K D+A+AI  TD++DFL+ ++
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI

Q9FMV5 Nuclear transcription factor Y subunit C-43.4e-2157.89Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI----FNETTAAAGDLG
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++      E   AA  LG
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI----FNETTAAAGDLG

Q9SMP0 Nuclear transcription factor Y subunit C-15.9e-2163.29Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI

Q9ZVL3 Nuclear transcription factor Y subunit C-32.2e-2058.54Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE
        HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE

Arabidopsis top hitse value%identityAlignment
AT1G08970.4 nuclear factor Y, subunit C91.6e-2158.54Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE
        HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE

AT1G54830.2 nuclear factor Y, subunit C31.6e-2158.54Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE
        HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNE

AT3G48590.1 nuclear factor Y, subunit C14.2e-2263.29Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI

AT5G63470.1 nuclear factor Y, subunit C42.4e-2257.89Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI----FNETTAAAGDLG
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++      E   AA  LG
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI----FNETTAAAGDLG

AT5G63470.2 nuclear factor Y, subunit C42.4e-2257.89Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI----FNETTAAAGDLG
        H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++      E   AA  LG
Subjt:  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI----FNETTAAAGDLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAAGCGGGAGTATATTCGGGCGTGATGTACTGGAAAACAGGGCCGCACTCGCTGCCGTTAGCAAGGATAAAGAAGATCATGAAGAAATCGGGAGAGGAGGTGAA
GATGATCTCCGGTGAGGCTCCGATCGTGTTCTCGAAGGCGTGTGAATTGTTCATCGAAGAATTGACGAGGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGC
TTCATAAAGAGGATGTGGCTTCCGCTATTCTGGCGACGGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCACCGCCGCCGCCGGGGATCTTGGTGAAAGT
GAAACTATTTCGGTAGGTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAAGCGGGAGTATATTCGGGCGTGATGTACTGGAAAACAGGGCCGCACTCGCTGCCGTTAGCAAGGATAAAGAAGATCATGAAGAAATCGGGAGAGGAGGTGAA
GATGATCTCCGGTGAGGCTCCGATCGTGTTCTCGAAGGCGTGTGAATTGTTCATCGAAGAATTGACGAGGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGC
TTCATAAAGAGGATGTGGCTTCCGCTATTCTGGCGACGGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCACCGCCGCCGCCGGGGATCTTGGTGAAAGT
GAAACTATTTCGGTAGGTTGTTGA
Protein sequenceShow/hide protein sequence
MRQAGVYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETTAAAGDLGES
ETISVGC