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PI0019261 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019261
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr07:9270521..9271000
RNA-Seq ExpressionPI0019261
SyntenyPI0019261
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042317.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]5.1e-5763.69Show/hide
Query:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC
        +GERV+YDA S REARLSEFIG DGEW+ PR+S EL++LW+RVQ VRPCLS+ DRWVWVPG QG  SI+SA + IRPR  +V W GLLWGGGN+P+HSFC
Subjt:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC

Query:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIWSCIIRDM
        AWL I+++LGTRDRL RWDSS+P S ++C+         FFSCPF  D+WS +++ M
Subjt:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIWSCIIRDM

KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]8.7e-5764.97Show/hide
Query:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC
        +GERV+YDA S REA+LS+FI  +GEW  PR+S EL++LWERVQ V PCLS+ D WVWVPGRQG  SI+SAWEAI PR  +V W GLLWGGGNIP+HSFC
Subjt:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC

Query:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIWSCIIRDM
        AWL I+DRL TRDRL RWDSSIP SC++C+         FFSCPF  D+WS + + M
Subjt:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIWSCIIRDM

TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]7.4e-5664.29Show/hide
Query:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC
        +GERV+YDA S REARLS+FIGS+GEW   R+  EL+ LW+RVQ V PCLS+ D WVWVPGRQG  SI+SAW+AIRPR  +V W GLLWGG NIP+HSFC
Subjt:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC

Query:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIWSCII
        AWL I+DRLGTRDRL RWDSS+P  C++C+         FFSCPF  D+WS ++
Subjt:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIWSCII

XP_016902060.1 PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]7.9e-5068.18Show/hide
Query:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC
        +GERV YDA S REARLS+FIG DGEW+ PR+S EL++LW+RVQ V PCLS+ DRWVW+PGRQG  SI+S WE IRPR  +V WA LLWGG NIP+HSFC
Subjt:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC

Query:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICKFF
        AWL I+D LGTRDRL RWDSS+     +C FF
Subjt:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICKFF

XP_031745548.1 uncharacterized protein LOC116405965 [Cucumis sativus]4.9e-5258.58Show/hide
Query:  GERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFCA
        G+RV+YD  S  +ARL +F+G DG+WR P +S +L+++W+RVQGVRP  S+ DRWVWV G     SI+SAWE IRP S +V W+GLLWGGGNIP+HSFCA
Subjt:  GERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFCA

Query:  WLVIRDRLGTRDRLSRWDSSIPRSCLIC---------KFFSCPFWYDIWSCIIRDM---HVLSQGWGMG
        WL IRDRLGTRDRLSRWD SIP SCL+C          FFSC F ++IWS I+  M   H +   WG+G
Subjt:  WLVIRDRLGTRDRLSRWDSSIPRSCLIC---------KFFSCPFWYDIWSCIIRDM---HVLSQGWGMG

TrEMBL top hitse value%identityAlignment
A0A1S4E258 uncharacterized protein LOC1034968803.8e-5068.18Show/hide
Query:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC
        +GERV YDA S REARLS+FIG DGEW+ PR+S EL++LW+RVQ V PCLS+ DRWVW+PGRQG  SI+S WE IRPR  +V WA LLWGG NIP+HSFC
Subjt:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC

Query:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICKFF
        AWL I+D LGTRDRL RWDSS+     +C FF
Subjt:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICKFF

A0A5A7TKU4 Non-LTR retroelement reverse transcriptase-like protein2.5e-5763.69Show/hide
Query:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC
        +GERV+YDA S REARLSEFIG DGEW+ PR+S EL++LW+RVQ VRPCLS+ DRWVWVPG QG  SI+SA + IRPR  +V W GLLWGGGN+P+HSFC
Subjt:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC

Query:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIWSCIIRDM
        AWL I+++LGTRDRL RWDSS+P S ++C+         FFSCPF  D+WS +++ M
Subjt:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIWSCIIRDM

A0A5A7TZS0 Reverse transcriptase domain-containing protein4.2e-5764.97Show/hide
Query:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC
        +GERV+YDA S REA+LS+FI  +GEW  PR+S EL++LWERVQ V PCLS+ D WVWVPGRQG  SI+SAWEAI PR  +V W GLLWGGGNIP+HSFC
Subjt:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC

Query:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIWSCIIRDM
        AWL I+DRL TRDRL RWDSSIP SC++C+         FFSCPF  D+WS + + M
Subjt:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIWSCIIRDM

A0A5A7V3Z0 Reverse transcriptase domain-containing protein6.5e-5066.92Show/hide
Query:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC
        +GERV+YDA S R+ARLS+FI  DGEW  PR+S EL++LWERVQ V PCLS+ D WVWVPGR+G  SI+SAWEA+RPR  +V W GLLWGGGNI +H FC
Subjt:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC

Query:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICKFFS
        AWL I+DRLGT DRL RWDSS+P  C++  F S
Subjt:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICKFFS

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein3.6e-5664.29Show/hide
Query:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC
        +GERV+YDA S REARLS+FIGS+GEW   R+  EL+ LW+RVQ V PCLS+ D WVWVPGRQG  SI+SAW+AIRPR  +V W GLLWGG NIP+HSFC
Subjt:  MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFC

Query:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIWSCII
        AWL I+DRLGTRDRL RWDSS+P  C++C+         FFSCPF  D+WS ++
Subjt:  AWLVIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIWSCII

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.8e-1234Show/hide
Query:  DRWVWVPGRQGDLSISSAWE---AIRPRSDKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIW
        D ++W        +I S  +   A+ P++  V W   +W   ++P+H+F  W+V  +RL TRDRL  W  SIP  CL+C          FF CPF   +W
Subjt:  DRWVWVPGRQGDLSISSAWE---AIRPRSDKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIW

AT1G60720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.3e-1332.65Show/hide
Query:  ARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLS---------IGDRWVWVPGRQGDLSISSA--WEAIRPRSDKVCWAGLLWGGGNIPRHSFCAWL
        AR+ E +G +G W+LP      L      Q +   +S         I D + WV G       SSA  W+AIRPR+ ++ WA  +W  G +P+H+F  W+
Subjt:  ARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLS---------IGDRWVWVPGRQGDLSISSA--WEAIRPRSDKVCWAGLLWGGGNIPRHSFCAWL

Query:  VIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIW
           DRL TR RL+ W       C +C           FSC F   +W
Subjt:  VIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIW

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.3e-1333.68Show/hide
Query:  DLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIWSCIIRDMHV
        DL  ++ W  + P  ++V W   +W  G IP+H+F AW+ +R RL T+DR+  W    P  CL C          FF C F  ++W      +HV
Subjt:  DLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLICK---------FFSCPFWYDIWSCIIRDMHV

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.5e-1432.77Show/hide
Query:  ELLELWERVQGVRPCLSIGDRWVW---VPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLICK-
        +L  L    QG+  C    D ++W   +       S    W A+ P+S  V W   +W   ++P+H+F  W+V  +RL TRDRL  W  SIP  CL+C  
Subjt:  ELLELWERVQGVRPCLSIGDRWVW---VPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLICK-

Query:  --------FFSCPFWYDIW
                FF C F   +W
Subjt:  --------FFSCPFWYDIW

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.7e-1336.17Show/hide
Query:  DRWVW-VPGRQGDLSISSA--WEAIRPRSDKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLICKFFSCPFWYDIWSCI
        D ++W V G +  +  SSA  W  + P  +KV W   +W  G IP+H+F +W+ IR RL TRD+L  W   +P  CL+C  F     +  + C+
Subjt:  DRWVW-VPGRQGDLSISSA--WEAIRPRSDKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLICKFFSCPFWYDIWSCI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGAGTGGTGTATGATGCTACGAGTAGTAGGGAGGCTAGGTTATCTGAGTTCATTGGCTCGGATGGTGAGTGGAGGTTACCGAGGATTTCTTGGGAGTTACT
TGAATTGTGGGAGAGGGTTCAGGGTGTTCGTCCTTGTTTGAGTATTGGGGATCGGTGGGTGTGGGTTCCGGGTCGTCAGGGGGATTTATCGATTTCGAGTGCGTGGGAGG
CTATTCGGCCTAGGAGTGATAAGGTTTGTTGGGCTGGTCTTCTGTGGGGTGGGGGCAATATTCCCAGACATTCTTTTTGTGCTTGGCTTGTTATTAGGGATAGGTTGGGC
ACTCGGGATAGGTTGAGTAGGTGGGATAGTTCGATTCCTCGATCGTGTCTTATATGCAAGTTTTTTTCTTGTCCCTTTTGGTATGATATCTGGTCTTGTATCATTCGGGA
TATGCACGTCCTCTCACAGGGTTGGGGGATGGGAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGAGTGGTGTATGATGCTACGAGTAGTAGGGAGGCTAGGTTATCTGAGTTCATTGGCTCGGATGGTGAGTGGAGGTTACCGAGGATTTCTTGGGAGTTACT
TGAATTGTGGGAGAGGGTTCAGGGTGTTCGTCCTTGTTTGAGTATTGGGGATCGGTGGGTGTGGGTTCCGGGTCGTCAGGGGGATTTATCGATTTCGAGTGCGTGGGAGG
CTATTCGGCCTAGGAGTGATAAGGTTTGTTGGGCTGGTCTTCTGTGGGGTGGGGGCAATATTCCCAGACATTCTTTTTGTGCTTGGCTTGTTATTAGGGATAGGTTGGGC
ACTCGGGATAGGTTGAGTAGGTGGGATAGTTCGATTCCTCGATCGTGTCTTATATGCAAGTTTTTTTCTTGTCCCTTTTGGTATGATATCTGGTCTTGTATCATTCGGGA
TATGCACGTCCTCTCACAGGGTTGGGGGATGGGAGGTTGA
Protein sequenceShow/hide protein sequence
MGERVVYDATSSREARLSEFIGSDGEWRLPRISWELLELWERVQGVRPCLSIGDRWVWVPGRQGDLSISSAWEAIRPRSDKVCWAGLLWGGGNIPRHSFCAWLVIRDRLG
TRDRLSRWDSSIPRSCLICKFFSCPFWYDIWSCIIRDMHVLSQGWGMGG