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PI0019378 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019378
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRNase H domain-containing protein
Genome locationchr11:27569702..27570496
RNA-Seq ExpressionPI0019378
SyntenyPI0019378
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031982.1 hypothetical protein E6C27_scaffold134G00730 [Cucumis melo var. makuwa]1.1e-1363.93Show/hide
Query:  EGRGYDVVICNDRGEVVATQGLCRNESFPV-VGKLMAISFGLQLVDGIGCFEVWVESDAEV
        +G GY VV+ ND+GE+V  Q  CR ESF V  GK+MAI FGL LV+G+GCFEVWV+SDAE+
Subjt:  EGRGYDVVICNDRGEVVATQGLCRNESFPV-VGKLMAISFGLQLVDGIGCFEVWVESDAEV

MBA0552383.1 hypothetical protein [Gossypium lobatum]3.1e-0828.23Show/hide
Query:  DLREVVVKHDPQVVFLSETKYDVRRMEAIKCWLNFDGCFVVNSEGRSGGLCLMWREEGRGYDVVICNDR---GEVVATQGLCRNESFPVVGKLMAISFGL
        +LR+++V++DP+V+FL ETK    ++ +I+     +GC  +N+ G+SGGL ++W+E  R Y  V  N R    +++   G    E + + G   AI   +
Subjt:  DLREVVVKHDPQVVFLSETKYDVRRMEAIKCWLNFDGCFVVNSEGRSGGLCLMWREEGRGYDVVICNDR---GEVVATQGLCRNESFPVVGKLMAISFGL

Query:  QLVDGIGCFEVWVESDAEVVVKIL
        +  +G+   ++ ++    +V ++L
Subjt:  QLVDGIGCFEVWVESDAEVVVKIL

XP_020412490.1 uncharacterized protein LOC18793550 [Prunus persica]1.4e-0854.1Show/hide
Query:  RAFNDLREVVVKHDPQVVFLSETKYDVRRMEAIKCWLNFDGCFVVNSEGRSGGLCLMWREE
        R   DLR +VV  DP VVFL ET+   R   +IK  L FD CFVV++ G SGGLCL W+ E
Subjt:  RAFNDLREVVVKHDPQVVFLSETKYDVRRMEAIKCWLNFDGCFVVNSEGRSGGLCLMWREE

XP_030939696.1 uncharacterized protein LOC115964548 [Quercus lobata]6.2e-0952.46Show/hide
Query:  RAFNDLREVVVKHDPQVVFLSETKYDVRRMEAIKCWLNFDGCFVVNSEGRSGGLCLMWREE
        RA  +L ++V    P++VFLSET  D   ME ++C L FDGCF V SEGR  GL L+W+EE
Subjt:  RAFNDLREVVVKHDPQVVFLSETKYDVRRMEAIKCWLNFDGCFVVNSEGRSGGLCLMWREE

XP_042988712.1 uncharacterized protein LOC122316247 [Carya illinoinensis]3.6e-0954.1Show/hide
Query:  RAFNDLREVVVKHDPQVVFLSETKYDVRRMEAIKCWLNFDGCFVVNSEGRSGGLCLMWREE
        R    LR++V K  P V+FL ETK  V +ME +K  L ++ CF V+SEGRSGGL LMW+EE
Subjt:  RAFNDLREVVVKHDPQVVFLSETKYDVRRMEAIKCWLNFDGCFVVNSEGRSGGLCLMWREE

TrEMBL top hitse value%identityAlignment
A0A2N9GN35 Uncharacterized protein8.7e-0947.62Show/hide
Query:  SSRAFNDLREVVVKHDPQVVFLSETKYDVRRMEAIKCWLNFDGCFVVNSEGRSGGLCLMWREE
        S+   ++L  +V + DP V+FLSETK D +RME+++C+  F G F+V S G+SGGL L+W +E
Subjt:  SSRAFNDLREVVVKHDPQVVFLSETKYDVRRMEAIKCWLNFDGCFVVNSEGRSGGLCLMWREE

A0A2N9I8Z6 Reverse transcriptase domain-containing protein8.7e-0947.62Show/hide
Query:  SSRAFNDLREVVVKHDPQVVFLSETKYDVRRMEAIKCWLNFDGCFVVNSEGRSGGLCLMWREE
        S+   ++L  +V + DP V+FLSETK D +RME+++C+  F G F+V S G+SGGL L+W +E
Subjt:  SSRAFNDLREVVVKHDPQVVFLSETKYDVRRMEAIKCWLNFDGCFVVNSEGRSGGLCLMWREE

A0A2N9IM22 DUF4283 domain-containing protein3.9e-0932.76Show/hide
Query:  SSRAFNDLREVVVKHDPQVVFLSETKYDVRRMEAIKCWLNFDGCFVVNSEGRSGGLCLMWREEG---------RGYDVVICNDRGEVVATQGL-------
        + +  N L  +V K  P+++FL ETK D++  E I   L F GCFVV S GR+GGL L+W+++             D+ + +  G++    G        
Subjt:  SSRAFNDLREVVVKHDPQVVFLSETKYDVRRMEAIKCWLNFDGCFVVNSEGRSGGLCLMWREEG---------RGYDVVICNDRGEVVATQGL-------

Query:  CRNESFPVVGKLMAIS
        CR+ES+ ++ KL ++S
Subjt:  CRNESFPVVGKLMAIS

A0A5A7SLR6 RNase H domain-containing protein5.3e-1463.93Show/hide
Query:  EGRGYDVVICNDRGEVVATQGLCRNESFPV-VGKLMAISFGLQLVDGIGCFEVWVESDAEV
        +G GY VV+ ND+GE+V  Q  CR ESF V  GK+MAI FGL LV+G+GCFEVWV+SDAE+
Subjt:  EGRGYDVVICNDRGEVVATQGLCRNESFPV-VGKLMAISFGLQLVDGIGCFEVWVESDAEV

A0A7J8LJ04 Uncharacterized protein1.5e-0828.23Show/hide
Query:  DLREVVVKHDPQVVFLSETKYDVRRMEAIKCWLNFDGCFVVNSEGRSGGLCLMWREEGRGYDVVICNDR---GEVVATQGLCRNESFPVVGKLMAISFGL
        +LR+++V++DP+V+FL ETK    ++ +I+     +GC  +N+ G+SGGL ++W+E  R Y  V  N R    +++   G    E + + G   AI   +
Subjt:  DLREVVVKHDPQVVFLSETKYDVRRMEAIKCWLNFDGCFVVNSEGRSGGLCLMWREEGRGYDVVICNDR---GEVVATQGLCRNESFPVVGKLMAISFGL

Query:  QLVDGIGCFEVWVESDAEVVVKIL
        +  +G+   ++ ++    +V ++L
Subjt:  QLVDGIGCFEVWVESDAEVVVKIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAGCTCAAGAGCGTTCAATGACCTTCGTGAGGTTGTAGTTAAGCATGATCCTCAGGTGGTATTCCTATCTGAGACAAAGTATGATGTGAGGCGAATGGAGGCTAT
CAAGTGTTGGCTAAATTTTGATGGTTGTTTTGTGGTAAATTCTGAAGGCAGGAGTGGAGGATTATGTCTTATGTGGCGGGAGGAGGGACGTGGATATGATGTTGTGATTT
GCAATGATAGGGGTGAGGTGGTTGCGACTCAAGGTCTTTGTCGCAATGAAAGCTTTCCGGTGGTAGGCAAGCTCATGGCCATATCGTTTGGTCTTCAGTTGGTTGATGGT
ATTGGTTGTTTTGAGGTTTGGGTCGAATCAGATGCTGAGGTTGTGGTGAAAATACTCAAGTCCCGTGATTTCGCTTTTCTCATTTGGGATGATCTATACGAAAGTTGTTG
A
mRNA sequenceShow/hide mRNA sequence
ATGAGGAGCTCAAGAGCGTTCAATGACCTTCGTGAGGTTGTAGTTAAGCATGATCCTCAGGTGGTATTCCTATCTGAGACAAAGTATGATGTGAGGCGAATGGAGGCTAT
CAAGTGTTGGCTAAATTTTGATGGTTGTTTTGTGGTAAATTCTGAAGGCAGGAGTGGAGGATTATGTCTTATGTGGCGGGAGGAGGGACGTGGATATGATGTTGTGATTT
GCAATGATAGGGGTGAGGTGGTTGCGACTCAAGGTCTTTGTCGCAATGAAAGCTTTCCGGTGGTAGGCAAGCTCATGGCCATATCGTTTGGTCTTCAGTTGGTTGATGGT
ATTGGTTGTTTTGAGGTTTGGGTCGAATCAGATGCTGAGGTTGTGGTGAAAATACTCAAGTCCCGTGATTTCGCTTTTCTCATTTGGGATGATCTATACGAAAGTTGTTG
A
Protein sequenceShow/hide protein sequence
MRSSRAFNDLREVVVKHDPQVVFLSETKYDVRRMEAIKCWLNFDGCFVVNSEGRSGGLCLMWREEGRGYDVVICNDRGEVVATQGLCRNESFPVVGKLMAISFGLQLVDG
IGCFEVWVESDAEVVVKILKSRDFAFLIWDDLYESC