CuGenDBv2

Gene ID	PI0019416
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	sigma factor binding protein 2, chloroplastic
Genome location	chr08:5794169..5796948
RNA-Seq Expression	PI0019416
Synteny	PI0019416
Gene Ontology terms	GO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domains	IPR008889 - VQ IPR039335 - Sigma factor binding protein 1/2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025974.1 sigma factor binding protein 2 [Cucumis melo var. makuwa]

4.7e-74

90.24

Show/hide

Query:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD
        MDAGAATGNN +TLDAV+RRKP KKTKQSN KLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCD AASTDQLYNTVS G DD
Subjt:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD

Query:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR
        DGASNLIVN+NNPSLVD+VPAEDDILGSFYDDFDDLIFPPPV+GN SGLLP P AAV YES AR
Subjt:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR

KAE8649682.1 hypothetical protein Csa_012221 [Cucumis sativus]

6.8e-73

88.41

Show/hide

Query:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD
        MDAG ATG++H+TLDAV+RRKPTKKTKQ  N+LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNT+SSG +D
Subjt:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD

Query:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR
        DGA+NLIVN+NN SLVDEVPAEDDILGSFYDDFDDLIFP PVIGNFSGLLPAP AAV YES AR
Subjt:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR

TYK04210.1 sigma factor binding protein 2 [Cucumis melo var. makuwa]

1.8e-73

89.63

Show/hide

Query:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD
        MDAGAATGNN +TLDAV+RRKP KKTKQSN KLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSK PPSAVCD AASTDQLYNTVS G DD
Subjt:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD

Query:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR
        DGASNLIVN+NNPSLVD+VPAEDDILGSFYDDFDDLIFPPPV+GN SGLLP P AAV YES AR
Subjt:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR

XP_008455708.1 PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo]

4.7e-74

90.24

Show/hide

Query:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD
        MDAGAATGNN +TLDAV+RRKP KKTKQSN KLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCD AASTDQLYNTVS G DD
Subjt:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD

Query:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR
        DGASNLIVN+NNPSLVD+VPAEDDILGSFYDDFDDLIFPPPV+GN SGLLP P AAV YES AR
Subjt:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR

XP_011653858.1 sigma factor binding protein 2, chloroplastic [Cucumis sativus]

6.8e-73

88.41

Show/hide

Query:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD
        MDAG ATG++H+TLDAV+RRKPTKKTKQ  N+LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNT+SSG +D
Subjt:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD

Query:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR
        DGA+NLIVN+NN SLVDEVPAEDDILGSFYDDFDDLIFP PVIGNFSGLLPAP AAV YES AR
Subjt:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3J8 VQ domain-containing protein

3.3e-73

88.41

Show/hide

Query:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD
        MDAG ATG++H+TLDAV+RRKPTKKTKQ  N+LKKPIKVVYISNPMKVQTSAS FMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNT+SSG +D
Subjt:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD

Query:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR
        DGA+NLIVN+NN SLVDEVPAEDDILGSFYDDFDDLIFP PVIGNFSGLLPAP AAV YES AR
Subjt:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR

A0A1S3C276 sigma factor binding protein 2, chloroplastic

2.3e-74

90.24

Show/hide

Query:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD
        MDAGAATGNN +TLDAV+RRKP KKTKQSN KLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCD AASTDQLYNTVS G DD
Subjt:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD

Query:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR
        DGASNLIVN+NNPSLVD+VPAEDDILGSFYDDFDDLIFPPPV+GN SGLLP P AAV YES AR
Subjt:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR

A0A5A7SJV9 Sigma factor binding protein 2

2.3e-74

90.24

Show/hide

Query:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD
        MDAGAATGNN +TLDAV+RRKP KKTKQSN KLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCD AASTDQLYNTVS G DD
Subjt:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD

Query:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR
        DGASNLIVN+NNPSLVD+VPAEDDILGSFYDDFDDLIFPPPV+GN SGLLP P AAV YES AR
Subjt:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR

A0A5D3BYM2 Sigma factor binding protein 2

8.7e-74

89.63

Show/hide

Query:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD
        MDAGAATGNN +TLDAV+RRKP KKTKQSN KLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSK PPSAVCD AASTDQLYNTVS G DD
Subjt:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDD

Query:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR
        DGASNLIVN+NNPSLVD+VPAEDDILGSFYDDFDDLIFPPPV+GN SGLLP P AAV YES AR
Subjt:  DGASNLIVNNNNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR

A0A6J1EY87 sigma factor binding protein 2, chloroplastic-like

1.4e-47

68.9

Show/hide

Query:  AGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDDDG
        AG  TGN+H+ LD VHRRKPTKKTKQ N    KPIKVVYISNPMKVQ SAS FMALVQ+LTGQDADFPDPS FPP+AV D AA  D ++NT +  +    
Subjt:  AGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDDDG

Query:  ASNLIVNNNNPSLVDEVPAEDD-ILGSFYDDFDDLIFPPPVIGNFSGLLPAPAA-AVAYESYAR
            ++NNNNPSL  E+P EDD  LGSFYDD DDLIFPPPVIGN+  LLPA AA AV YESYAR
Subjt:  ASNLIVNNNNPSLVDEVPAEDD-ILGSFYDDFDDLIFPPPVIGNFSGLLPAPAA-AVAYESYAR

SwissProt top hits

e value

%identity

Alignment

O80669 Sigma factor binding protein 2, chloroplastic

9.8e-06

43.75

Show/hide

Query:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAV
        MD  ++T   +Q   +    +   K K+ +    KPIKV YISNPM+V+T  S+F  LVQELTGQDA    PS    +AV
Subjt:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAV

Q9LDH1 Sigma factor binding protein 1, chloroplastic

3.0e-07

57.81

Show/hide

Query:  VHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFPPS
        V R+ P +K K ++    KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   P S
Subjt:  VHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFPPS

Arabidopsis top hits

e value

%identity

Alignment

AT2G41180.1 VQ motif-containing protein

6.9e-07

43.75

Show/hide

Query:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAV
        MD  ++T   +Q   +    +   K K+ +    KPIKV YISNPM+V+T  S+F  LVQELTGQDA    PS    +AV
Subjt:  MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAV

AT3G56710.1 sigma factor binding protein 1

2.2e-08

57.81

Show/hide

Query:  VHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFPPS
        V R+ P +K K ++    KPIKV YISNPM+VQT AS+F  LVQELTGQDA D  P+P   P S
Subjt:  VHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDA-DF-PDPSKFPPS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACGCCGGCGCCGCCACCGGAAACAACCACCAAACTCTCGACGCCGTTCACCGGCGCAAACCCACCAAGAAAACAAAACAATCCAACAACAAATTAAAAAAACCCAT
CAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAGTTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTA
AATTCCCCCCCTCCGCCGTATGCGACGGCGCCGCCTCCACCGACCAACTCTACAACACGGTATCCAGTGGCGATGACGACGACGGTGCTAGTAATCTTATTGTGAATAAT
AACAACCCTTCACTTGTTGACGAGGTGCCGGCGGAGGATGACATTCTCGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCGCCTCCAGTAATCGGAAACTTCTC
TGGGTTGCTTCCGGCTCCCGCGGCGGCGGTTGCCTATGAATCTTATGCAAGGTGA

mRNA sequence

Show/hide mRNA sequence

CGCTTGGCTTCCTCTCTCCCAATTAAATTCTTGTCGGTTTCTTCTCTCTCCCAATCCCTATATTTTTCCTCACTCTCTCTCCTTTTTTCCCTAAAAACCCTTTTTCCCCT
TCCAAAATGGACGCCGGCGCCGCCACCGGAAACAACCACCAAACTCTCGACGCCGTTCACCGGCGCAAACCCACCAAGAAAACAAAACAATCCAACAACAAATTAAAAAA
ACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAGTTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACC
CCTCTAAATTCCCCCCCTCCGCCGTATGCGACGGCGCCGCCTCCACCGACCAACTCTACAACACGGTATCCAGTGGCGATGACGACGACGGTGCTAGTAATCTTATTGTG
AATAATAACAACCCTTCACTTGTTGACGAGGTGCCGGCGGAGGATGACATTCTCGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCGCCTCCAGTAATCGGAAA
CTTCTCTGGGTTGCTTCCGGCTCCCGCGGCGGCGGTTGCCTATGAATCTTATGCAAGGTGAAAATATTTATTGATATTTTAATGTGTGAAAGATCCTTGTATCTCTTTAG
TTTTATCTTCCATTTTTCTATAAGCTTTTTTAATGAATATATATAATTGTATATTAATTGGGGAGTTAATTGTTAACTTGTGAAAAAAAATATCAAGGTATCAAATTTAT
GAACACATCTATATCATAATAAAAAGATGTTTGAAATAAATTAAAAGAAATTAGTGGATATTTTAATTTATATGTTATATCTCATTATTTTAAATAGTGTTTTTCTTAAT
ATTTGATTGCGATTTTCCATCACATTTTTATATATGAAGATATATTAATTAATTTTTATACCATGTCATACATTTTACTTTATGAAAAGAACATTAACATGGTGCATCTA
GAGTGCACCTATTTTTGTACCCTTACTTCATCCCACACACTGAAAATAAAATTTTTTAAAAAAAAACACCAAGAAGAATTTGTCCGTCAGACAAATTATAATTGCAAAAT
TAGATGAGATAAACAAAAATGAGTGTATTTTAATGATACAACCATTGATATTTTCATCAAGTAAATTAAAGTTTTTAAGACAGATTTGAGGTTTAAGTTTTCACATTTAA
ATGTAATTTTTATATCATTCAATTCAATTTTGTTTCTAATGATTGAAAACAAATGATTTTAATCATTTACGAATTACTTTCAACATTTTAGTTAGATGTTGTTTCACTGA
ATATAAATATAGGTTTTTATGGGTATATGTGTATATATATTGTTTTTCTATTATTATTGCTTGTTTGGATGGAGGGAATTGATTTTTGATTAGCTGGTATCTTCTCATCT
TCTTTTAAGATGAGAAATGATATGGGACAAAATGGAGAAATAATATATGGACCCAAACATCAACTTTTTTTCTTTTGTTAGGGTAATCTCACAACAACATGGGTAAAGGG
TTGAAATGAAATAATGGAACTGGCTGAGCTATCAAAGATATGATAACTCATATACCTCATGGCCAAACACCCTAATGACCCATAAAAGGGGTCAATGTAATAAACTTTCA
TATTTGTGTGCTAAAGAATTTTAAATTGTTAGATAGAGATAAAATACAAATGATTATTCAGTACATACCCTCATGCTAATCTTTAAGCTTTTTAAAAAATTGTATATAAT
ACACTCATATGTTATTAAGAAATCGACAATAAAAATTAAACAGAAAAACGTAAATAATAGAAAATTTGTACAAAGAATTATCTGGTTTGCTAATAGCGTGTTGGTTACGT
CTATGAACAGAGGAAAAAAGTATTTCATTATTAAAAAAATGCATATCATTTTTTAGATTAAGGGGCACCAGTAGAGTTAGAAGGTTCATATAGCGCATTGCTAGAGCCAA
AATTATAGACAACGTAAATAGCATAAACACAAATAAAATTTCGGCTTTGAGCTCCAACAAGAAGTGTGTCACCCCTGAACCCTATCTTGTTAATCAGGTCAATGAAACCT
CGTATTTGGTTGTTAGGAGAGCTAAATAACAGAGTGAAAAACTTGAATTCTTATATATCCACTCATATGTACTTCATTGTACTCTCTATATATATAAAGATCCATATGTA
CAGATATTATCATTTCCATCCAGAAAGTCGTATGCTTTGGAAGAAACTTGTGCATTTTGGAGAGATTTTGATTGATTCAAAAGAAGAACCTACTTCAATTGATATGCCCT
TAGGCACGACCATGCATAACATAGAAATCATACTTGGAAAAAGGGGGGATAATTAGTTAGACCAGTAGGCGTTGTAGTAAAACGTAACTGATTGCAAAATAAGAGGGAAA
AACAGTTACATTACAATCACCTTCTAGGGAGGTTCATTTGATATCTAAAGAAAATTGCTCAGCAACAGTCAAGTATAAGTGGAAAATGTTGGAGTAAACTAGAAAAGCTT
CAGTAGAGCCGAATATAAATTTGGGCTAGAGCTTTTGTCTAGTAAGAGAAGTAGTTATGAACCCTGTAGACCATCCTGTGGTGAAGGGAAGATCCCAATTGGTAAAGAAA
AACCCATATATAACCTCTTGGGTTATTCTAGGAAGAAGGAGTAGAATAAGGAATAAATATAATTGAAAATTTTATTTCTAACAATTTCTGTTTTTTTTTTCCTAGAAGGT
TTAATTTTTGATAGAAAAAAAATACAAAAG

Protein sequence

Show/hide protein sequence

MDAGAATGNNHQTLDAVHRRKPTKKTKQSNNKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTVSSGDDDDGASNLIVNN
NNPSLVDEVPAEDDILGSFYDDFDDLIFPPPVIGNFSGLLPAPAAAVAYESYAR

PI0019416 (gene) of Melon (PI 482460) v1 genome