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PI0019549 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019549
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDNA-directed RNA polymerases I and III subunit RPAC2
Genome locationchr12:23945193..23948668
RNA-Seq ExpressionPI0019549
SyntenyPI0019549
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain
IPR033898 - DNA-directed RNA polymerases I and III subunit AC19
IPR036603 - RNA polymerase, RBP11-like subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031779.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo var. makuwa]7.9e-4896.94Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTE
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDF LTK +
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTE

XP_004145267.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus]1.1e-4697.92Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTK
        MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDF LTK
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTK

XP_004147276.2 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus]9.7e-4692.93Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTER
        MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLD +LT   R
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTER

XP_008457416.1 PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo]7.9e-4896.94Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTE
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDF LTK +
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTE

XP_038893936.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida]3.9e-4797.92Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTK
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLD +LTK
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTK

TrEMBL top hitse value%identityAlignment
A0A0A0LUT5 RNA_pol_L_2 domain-containing protein4.7e-4692.93Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTER
        MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLD +LT   R
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTER

A0A0A0LV21 RNA_pol_L_2 domain-containing protein5.5e-4797.92Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTK
        MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDF LTK
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTK

A0A1S3C5G1 DNA-directed RNA polymerases I and III subunit RPAC23.8e-4896.94Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTE
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDF LTK +
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTE

A0A5A7SR68 DNA-directed RNA polymerases I and III subunit RPAC23.8e-4896.94Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTE
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDF LTK +
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTE

A0A5D3BBZ7 DNA-directed RNA polymerases I and III subunit RPAC23.8e-4896.94Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTE
        MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDF LTK +
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTE

SwissProt top hitse value%identityAlignment
P0DPB6 DNA-directed RNA polymerases I and III subunit RPAC24.4e-1741.58Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTER
        M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G  PA E  +     LM VCQHV + F+ ++ D++  K  R
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTER

Query:  H
        +
Subjt:  H

P97304 DNA-directed RNA polymerases I and III subunit RPAC22.9e-1640Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTER
        M   + TD    TF + +EDHTL N LRY + ++P V FCGY+  HPS++++N+R+QT G  PA E  +     L+ VCQHV   F+ ++ D++  K  +
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTER

Q1RMG8 DNA-directed RNA polymerases I and III subunit RPAC21.7e-1640.59Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTER
        M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G  PA E  +    +LM VCQHV + F+ ++ +++  K  R
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTER

Query:  H
        +
Subjt:  H

Q5XK67 DNA-directed RNA polymerases I and III subunit RPAC22.6e-1745.56Show/hide
Query:  DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTK
        +E+  TF + +EDHTL N+LRY + ++P V FCGYSI HPS+ ++N R+QT  G PA E  +     L+ VCQHV NTF+ ++ +++  K
Subjt:  DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTK

Q6DRI4 DNA-directed RNA polymerases I and III subunit RPAC22.2e-1647.13Show/hide
Query:  DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFE
        DE   TF + +EDHTL N+LRY + +   V FCGYSI HPS++++N R+QT  G PA E L++   NL  VC+HV  TF+  + +F+
Subjt:  DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFE

Arabidopsis top hitse value%identityAlignment
AT2G29540.1 RNApolymerase 14 kDa subunit3.8e-3265.59Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFE
        MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV +++
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFE

AT2G29540.2 RNApolymerase 14 kDa subunit3.8e-3265.59Show/hide
Query:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFE
        MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV +++
Subjt:  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFE

AT2G29540.3 RNApolymerase 14 kDa subunit4.1e-1867.8Show/hide
Query:  PRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFE
        PRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV +++
Subjt:  PRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFE

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like3.8e-0830.11Show/hide
Query:  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPA-REVLKDACQNLMVVCQHVRNTFDKAVLDF
        S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R+ TT   +  +    A  +L     +++N F+  V  F
Subjt:  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPA-REVLKDACQNLMVVCQHVRNTFDKAVLDF

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like1.0e-0536.36Show/hide
Query:  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVV
        S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R     DP     KD  +NL VV
Subjt:  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACATGGATCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGATCCAAGAGT
GACATTCTGTGGGTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTCCAGACAACAGGTGATCCTGCTAGAGAAGTTTTGAAAGATGCTTGTCAGAACT
TGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATTTCGAACTCACCAAAACTGAGAGACATTAA
mRNA sequenceShow/hide mRNA sequence
GATTTGTTCTCTCTCCCGGCGTCTCTGCTCCAACTCACCGGCCGGCTGGCCACCGACGACAACTACTTGATCTTCTTGCCCTTCTCCTCTCTCTTGCAATGGAACATGGA
TCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGATCCAAGAGTGACATTCTGTGG
GTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTCCAGACAACAGGTGATCCTGCTAGAGAAGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGT
GTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATTTCGAACTCACCAAAACTGAGAGACATTAATATCAAATAGAATGGGACCTTTGTTTTTTCTTTGCCTTG
TAATTTTTCCCTTTTTTTTGTTCAATACTTGTAGTTTACAGTTTATTGAGATGGGTTAGTTAGGAACAGATTAATTCCATTGAATTTTGCTTGCTTTTATTGGTATCTCT
ACTGATGGCTTATCCCTCCCTTCAGGGATTTCATGTTAAATATTTGATTTTGTTGATTTTACGTCTTATTAGAAGAATGCAGATATATTAAGATT
Protein sequenceShow/hide protein sequence
MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFELTKTERH