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PI0019584 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019584
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr12:21812992..21813768
RNA-Seq ExpressionPI0019584
SyntenyPI0019584
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-5167.92Show/hide
Query:  VGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVDMSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLK
        V   D ATGAH+ETFAD GSNV   FN+GVPLGD H++DI T+Y QGV MS D++ GIRA ++S+ RN SSGSKRK G +H+E VEVI +A +F NDQLK
Subjt:  VGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVDMSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLK

Query:  AIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDIEGFLSVPTEL
         I DWPKEK ATEVEL  EVVKQLQDIP+LRS+DR KLM+I+FRSV+ IEGFLS+PT+L
Subjt:  AIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDIEGFLSVPTEL

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]6.2e-5570.25Show/hide
Query:  VGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVDMSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLK
        V  KDRAT A +ETFAD+GSNVP  FN  VPL D HD+DI  MY QGV MSPD+M GIRA ++S+ +NCSSGSKRK G +H+ETVEVI++A++F NDQLK
Subjt:  VGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVDMSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLK

Query:  AIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDIEGFLSVPTE
        AIA+WPKEK ATEVEL  EV+KQLQDIPEL+SRDR KL++I+FRSV+ IEGFLS+PTE
Subjt:  AIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDIEGFLSVPTE

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]5.4e-5167.92Show/hide
Query:  VGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVDMSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLK
        V  KD+AT A +ETFAD+GSN+P  FN+GVPLGD H EDI TMY QGV MS D+M G RA ++S+ RNCSS SKRK G QH+ETVEVIR+AM F NDQLK
Subjt:  VGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVDMSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLK

Query:  AIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDIEGFLSVPTEL
        AIADW KEK A +VEL   VVKQLQDIP+L++RDR K+++I+F SV+ IEGFLS+PTEL
Subjt:  AIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDIEGFLSVPTEL

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-4753.33Show/hide
Query:  MMGPSCSGFGWNEEYQRIIA---------SSHNGS-------------CLIVGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVD
        M GPSCSGFGWNEE+Q IIA          SH  +                V  KDRATGA +ETF D+GSNVP  FN+ +PLGD HDEDI TMY QGV 
Subjt:  MMGPSCSGFGWNEEYQRIIA---------SSHNGS-------------CLIVGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVD

Query:  MSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLKAIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDI
        +SPD+M GIRA                         EVIR+ M+F N+QLKAIADW KEK A E+E+  +VVKQLQDIPELRS+ R KLM+I+FRS++ I
Subjt:  MSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLKAIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDI

Query:  EGFLSVPTEL
         GFLS+PTEL
Subjt:  EGFLSVPTEL

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.3e-6060.95Show/hide
Query:  MMGPSCSGFGWNEEYQRIIA---------SSHNGS-------------CLIVGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVD
        M GPSCSGFGWNEE+Q IIA          SH  +                V  KDRATGA +ETF ++GSNV   FN+ +PLGD HDEDI TMY QGV 
Subjt:  MMGPSCSGFGWNEEYQRIIA---------SSHNGS-------------CLIVGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVD

Query:  MSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLKAIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDI
        MSPD+M GIRA ++S+ RNCSS SKRK G + +ETVEVIR+ M+F N+QLKAIADWPKEK A EVE+  +VVKQLQDIP+LRS+DR KLM+I+FRS++ I
Subjt:  MSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLKAIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDI

Query:  EGFLSVPTEL
        EGFLS+PTEL
Subjt:  EGFLSVPTEL

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859536.3e-6160.95Show/hide
Query:  MMGPSCSGFGWNEEYQRIIA---------SSHNGS-------------CLIVGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVD
        M GPSCSGFGWNEE+Q IIA          SH  +                V  KDRATGA +ETF ++GSNV   FN+ +PLGD HDEDI TMY QGV 
Subjt:  MMGPSCSGFGWNEEYQRIIA---------SSHNGS-------------CLIVGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVD

Query:  MSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLKAIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDI
        MSPD+M GIRA ++S+ RNCSS SKRK G + +ETVEVIR+ M+F N+QLKAIADWPKEK A EVE+  +VVKQLQDIP+LRS+DR KLM+I+FRS++ I
Subjt:  MSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLKAIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDI

Query:  EGFLSVPTEL
        EGFLS+PTEL
Subjt:  EGFLSVPTEL

A0A5A7SQU2 Putative nuclease HARBI13.0e-5570.25Show/hide
Query:  VGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVDMSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLK
        V  KDRAT A +ETFAD+GSNVP  FN  VPL D HD+DI  MY QGV MSPD+M GIRA ++S+ +NCSSGSKRK G +H+ETVEVI++A++F NDQLK
Subjt:  VGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVDMSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLK

Query:  AIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDIEGFLSVPTE
        AIA+WPKEK ATEVEL  EV+KQLQDIPEL+SRDR KL++I+FRSV+ IEGFLS+PTE
Subjt:  AIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDIEGFLSVPTE

A0A5A7U0H7 Retrotransposon protein6.3e-6160.95Show/hide
Query:  MMGPSCSGFGWNEEYQRIIA---------SSHNGS-------------CLIVGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVD
        M GPSCSGFGWNEE+Q IIA          SH  +                V  KDRATGA +ETF ++GSNV   FN+ +PLGD HDEDI TMY QGV 
Subjt:  MMGPSCSGFGWNEEYQRIIA---------SSHNGS-------------CLIVGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVD

Query:  MSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLKAIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDI
        MSPD+M GIRA ++S+ RNCSS SKRK G + +ETVEVIR+ M+F N+QLKAIADWPKEK A EVE+  +VVKQLQDIP+LRS+DR KLM+I+FRS++ I
Subjt:  MSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLKAIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDI

Query:  EGFLSVPTEL
        EGFLS+PTEL
Subjt:  EGFLSVPTEL

A0A5D3BZU3 Retrotransposon protein9.1e-5267.92Show/hide
Query:  VGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVDMSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLK
        V   D ATGAH+ETFAD GSNV   FN+GVPLGD H++DI T+Y QGV MS D++ GIRA ++S+ RN SSGSKRK G +H+E VEVI +A +F NDQLK
Subjt:  VGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVDMSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLK

Query:  AIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDIEGFLSVPTEL
         I DWPKEK ATEVEL  EVVKQLQDIP+LRS+DR KLM+I+FRSV+ IEGFLS+PT+L
Subjt:  AIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDIEGFLSVPTEL

A0A5D3CVB7 Retrotransposon protein2.6e-5167.92Show/hide
Query:  VGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVDMSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLK
        V  KD+AT A +ETFAD+GSN+P  FN+GVPLGD H EDI TMY QGV MS D+M G RA ++S+ RNCSS SKRK G QH+ETVEVIR+AM F NDQLK
Subjt:  VGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVDMSPDDMLGIRADRSSDGRNCSSGSKRKWGGQHHETVEVIRNAMDFENDQLK

Query:  AIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDIEGFLSVPTEL
        AIADW KEK A +VEL   VVKQLQDIP+L++RDR K+++I+F SV+ IEGFLS+PTEL
Subjt:  AIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDIEGFLSVPTEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGGGCCATCCTGTAGTGGGTTTGGATGGAATGAAGAATATCAACGCATCATCGCATCATCGCATAACGGGAGTTGTTTGATAGTTGGGTCAAAAGATCGGGCAAC
AGGAGCACATGCGGAGACCTTTGCTGACATGGGATCTAATGTGCCAAAAAGTTTTAATAATGGTGTTCCACTTGGTGATTTACATGATGAAGACATCTCGACGATGTATT
GTCAAGGAGTGGATATGTCACCAGATGACATGTTAGGAATACGTGCAGATCGATCAAGTGATGGACGAAATTGTTCAAGTGGAAGTAAGAGGAAATGGGGTGGTCAACAT
CATGAAACAGTGGAGGTGATCAGGAATGCAATGGACTTTGAAAACGATCAATTAAAGGCAATTGCAGATTGGCCAAAAGAAAAGTGTGCAACAGAGGTCGAATTGCATGT
TGAAGTCGTGAAACAACTGCAAGATATCCCTGAACTACGGAGCCGAGATAGGATAAAGCTTATGCGAATCATATTTCGTAGTGTGGATGACATAGAGGGATTCTTGTCGG
TTCCAACGGAACTTAATTGGAGTATTGCAATATTCTCTTGGAAGAAAATGTTTGATCGGTTGTCGATTTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGGGCCATCCTGTAGTGGGTTTGGATGGAATGAAGAATATCAACGCATCATCGCATCATCGCATAACGGGAGTTGTTTGATAGTTGGGTCAAAAGATCGGGCAAC
AGGAGCACATGCGGAGACCTTTGCTGACATGGGATCTAATGTGCCAAAAAGTTTTAATAATGGTGTTCCACTTGGTGATTTACATGATGAAGACATCTCGACGATGTATT
GTCAAGGAGTGGATATGTCACCAGATGACATGTTAGGAATACGTGCAGATCGATCAAGTGATGGACGAAATTGTTCAAGTGGAAGTAAGAGGAAATGGGGTGGTCAACAT
CATGAAACAGTGGAGGTGATCAGGAATGCAATGGACTTTGAAAACGATCAATTAAAGGCAATTGCAGATTGGCCAAAAGAAAAGTGTGCAACAGAGGTCGAATTGCATGT
TGAAGTCGTGAAACAACTGCAAGATATCCCTGAACTACGGAGCCGAGATAGGATAAAGCTTATGCGAATCATATTTCGTAGTGTGGATGACATAGAGGGATTCTTGTCGG
TTCCAACGGAACTTAATTGGAGTATTGCAATATTCTCTTGGAAGAAAATGTTTGATCGGTTGTCGATTTTATGA
Protein sequenceShow/hide protein sequence
MMGPSCSGFGWNEEYQRIIASSHNGSCLIVGSKDRATGAHAETFADMGSNVPKSFNNGVPLGDLHDEDISTMYCQGVDMSPDDMLGIRADRSSDGRNCSSGSKRKWGGQH
HETVEVIRNAMDFENDQLKAIADWPKEKCATEVELHVEVVKQLQDIPELRSRDRIKLMRIIFRSVDDIEGFLSVPTELNWSIAIFSWKKMFDRLSIL