; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0019616 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019616
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr07:8317992..8318438
RNA-Seq ExpressionPI0019616
SyntenyPI0019616
Gene Ontology termsNA
InterPro domainsIPR038720 - YprB, ribonuclease H-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037008.1 subtilisin-like protease SBT3.17 isoform X1 [Cucumis melo var. makuwa]4.8e-2561.26Show/hide
Query:  RSSEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEVPEELKL
        RSSEGR+ SSRS RKRGGQT +IVE+IRN M++ NNQLK IAE    QRQ E   R+EVV+QLQ I +LS+R +V+LMRI+MH+  D++AFL +P ELKL
Subjt:  RSSEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEVPEELKL

Query:  DYYTTILVENA
        +Y T +L  NA
Subjt:  DYYTTILVENA

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-2763.25Show/hide
Query:  MDERPDRSSEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEV
        M  RPDRS+EGR+GSS SKRK+GGQ V+ +EIIRN M+++N++LKAI EWLN+QRQ   A   EVVRQLQ I +LS  DRVR M+ILM NV+D+KAFL++
Subjt:  MDERPDRSSEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEV

Query:  PEELKLDYYTTILVENA
         +ELKLDY T I  +NA
Subjt:  PEELKLDYYTTILVENA

KAA0065601.1 retrotransposon protein [Cucumis melo var. makuwa]6.0e-2866.97Show/hide
Query:  SEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEVPEELKLDY
        SEGR+ SSRSKRK G QT + V+II NA++Y N QLKAIA+  N+QRQ + ASR+EV+ QLQGI KLSTRDRVRL+ I+MHNV++++AFLEVP+ELKLDY
Subjt:  SEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEVPEELKLDY

Query:  YTTILVENA
         TT+L +NA
Subjt:  YTTILVENA

TYK07171.1 retrotransposon protein [Cucumis melo var. makuwa]6.0e-2866.97Show/hide
Query:  SEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEVPEELKLDY
        SEGR+ SSRSKRK G QT + V+II NA++Y N QLKAIA+  N+QRQ + ASR+EV+ QLQGI KLSTRDRVRL+ I+MHNV++++AFLEVP+ELKLDY
Subjt:  SEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEVPEELKLDY

Query:  YTTILVENA
         TT+L +NA
Subjt:  YTTILVENA

TYK18628.1 retrotransposon protein [Cucumis melo var. makuwa]9.3e-2157.52Show/hide
Query:  RPDRSSEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEVPEE
        R  R SEGR  SS SKRKR GQ     +I+R A++Y N QL  IA+WL LQRQ    +R EVVRQL  I +L+  DR RLMRILMHNV+D+KAFLEVP+ 
Subjt:  RPDRSSEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEVPEE

Query:  LKLDYYTTILVEN
        +K  Y + IL EN
Subjt:  LKLDYYTTILVEN

TrEMBL top hitse value%identityAlignment
A0A5A7T2J7 Subtilisin-like protease SBT3.17 isoform X12.3e-2561.26Show/hide
Query:  RSSEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEVPEELKL
        RSSEGR+ SSRS RKRGGQT +IVE+IRN M++ NNQLK IAE    QRQ E   R+EVV+QLQ I +LS+R +V+LMRI+MH+  D++AFL +P ELKL
Subjt:  RSSEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEVPEELKL

Query:  DYYTTILVENA
        +Y T +L  NA
Subjt:  DYYTTILVENA

A0A5A7TZA5 Retrotransposon protein4.5e-2156.9Show/hide
Query:  MDERPDRSSEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEV
        M  R  R SEGR  SS SK+KRGG T+   +I+R A++Y N QL  IAEW  LQRQ    +R EVVRQL+ I +L+  DR RLMRIL+HNVND+KAFLEV
Subjt:  MDERPDRSSEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEV

Query:  PEELKLDYYTTILVEN
        P+ +K  Y + IL EN
Subjt:  PEELKLDYYTTILVEN

A0A5A7V469 Retrotransposon protein6.5e-2863.25Show/hide
Query:  MDERPDRSSEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEV
        M  RPDRS+EGR+GSS SKRK+GGQ V+ +EIIRN M+++N++LKAI EWLN+QRQ   A   EVVRQLQ I +LS  DRVR M+ILM NV+D+KAFL++
Subjt:  MDERPDRSSEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEV

Query:  PEELKLDYYTTILVENA
         +ELKLDY T I  +NA
Subjt:  PEELKLDYYTTILVENA

A0A5A7VIQ2 Retrotransposon protein2.9e-2866.97Show/hide
Query:  SEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEVPEELKLDY
        SEGR+ SSRSKRK G QT + V+II NA++Y N QLKAIA+  N+QRQ + ASR+EV+ QLQGI KLSTRDRVRL+ I+MHNV++++AFLEVP+ELKLDY
Subjt:  SEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEVPEELKLDY

Query:  YTTILVENA
         TT+L +NA
Subjt:  YTTILVENA

A0A5D3C5I7 Retrotransposon protein2.9e-2866.97Show/hide
Query:  SEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEVPEELKLDY
        SEGR+ SSRSKRK G QT + V+II NA++Y N QLKAIA+  N+QRQ + ASR+EV+ QLQGI KLSTRDRVRL+ I+MHNV++++AFLEVP+ELKLDY
Subjt:  SEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEVPEELKLDY

Query:  YTTILVENA
         TT+L +NA
Subjt:  YTTILVENA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGAACGACCTGATCGCTCAAGTGAGGGTAGGAGTGGTTCAAGCAGATCCAAGAGGAAGCGGGGAGGCCAAACAGTAAAAATCGTGGAAATCATTCGCAATGCAAT
GGACTATGCGAATAACCAGCTGAAGGCCATTGCAGAGTGGCTGAATTTACAACGTCAAGTTGAGCGCGCCTCTCGTTCAGAAGTCGTTAGACAGTTGCAGGGGATTCTTA
AACTGAGTACCCGCGACAGAGTGCGCCTTATGCGGATACTAATGCACAATGTCAACGACATTAAAGCATTCTTGGAGGTACCTGAGGAGCTTAAGTTGGACTACTACACG
ACCATTCTCGTAGAGAATGCTCGAGTGCTTCTGTGTTTATTCGTCTGTTTTCTAGTTCATCTTCTTCACTGTATTTGTCGTAATTTCAGGATGTGTTGTACCAAACTTTT
GGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGAACGACCTGATCGCTCAAGTGAGGGTAGGAGTGGTTCAAGCAGATCCAAGAGGAAGCGGGGAGGCCAAACAGTAAAAATCGTGGAAATCATTCGCAATGCAAT
GGACTATGCGAATAACCAGCTGAAGGCCATTGCAGAGTGGCTGAATTTACAACGTCAAGTTGAGCGCGCCTCTCGTTCAGAAGTCGTTAGACAGTTGCAGGGGATTCTTA
AACTGAGTACCCGCGACAGAGTGCGCCTTATGCGGATACTAATGCACAATGTCAACGACATTAAAGCATTCTTGGAGGTACCTGAGGAGCTTAAGTTGGACTACTACACG
ACCATTCTCGTAGAGAATGCTCGAGTGCTTCTGTGTTTATTCGTCTGTTTTCTAGTTCATCTTCTTCACTGTATTTGTCGTAATTTCAGGATGTGTTGTACCAAACTTTT
GGCTTAA
Protein sequenceShow/hide protein sequence
MDERPDRSSEGRSGSSRSKRKRGGQTVKIVEIIRNAMDYANNQLKAIAEWLNLQRQVERASRSEVVRQLQGILKLSTRDRVRLMRILMHNVNDIKAFLEVPEELKLDYYT
TILVENARVLLCLFVCFLVHLLHCICRNFRMCCTKLLA