; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0019660 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019660
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr05:6706292..6706948
RNA-Seq ExpressionPI0019660
SyntenyPI0019660
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042317.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]3.5e-7268.54Show/hide
Query:  MRDRDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPK
        +R RD  + HV +EVGDG  CRVWLDPWL G  I+ Q+GE V+YDAA+RREAR+S+FIG DGEW+W RVS EL +LW+RVQ VR CLS+ DRWVWVP  +
Subjt:  MRDRDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPK

Query:  GEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF
        G FSI+SA + IRPR  +V W GLLWGGGN+P+HSFCAWL I+++LGTRDRL RWDSS+P S +LCQGGVESRDHLFF
Subjt:  GEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF

KAA0062318.1 uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]3.5e-6456.81Show/hide
Query:  MRDRDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPK
        +R R+  +  V M+VG+G   RVWLDPWL  GAI+ Q+GE V+YDAA+RR+AR+S FI  DGEW W RVS EL +LWERVQ V  CLS+ D WVWVP  +
Subjt:  MRDRDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPK

Query:  GEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFFLVLLGMISGLVLFGIWRPLIGL
        G FSI+SAWEA+RPR  +V W GLLWGGGNI +H FCAWL I+DRLGT DRL RWDSS+P  C+L                         FG W PLIGL
Subjt:  GEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFFLVLLGMISGLVLFGIWRPLIGL

Query:  GGGRLSCLGSVVR
        G G LSCLG V++
Subjt:  GGGRLSCLGSVVR

TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]4.0e-6066.67Show/hide
Query:  DGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPKGEFSISSAWEAIRPRS
        D R  R W    +  GAI+ Q+GE V+YDAA+RREAR+S FIG +GEW WSRV  EL  LW+RVQ V  CLS+ D WVWVP  +G FSI+SAW+AIRPR 
Subjt:  DGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPKGEFSISSAWEAIRPRS

Query:  EKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF
         +V W GLLWGG NIP+HSFCAWL I+DRLGTRDRL RWDSS+P  C+LC+GGVESRDHLFF
Subjt:  EKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF

XP_031737556.1 uncharacterized protein LOC116402448 [Cucumis sativus]2.6e-6464.04Show/hide
Query:  MRDRDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPK
        +R RDI + HV MEVG+G+ CRVWLDP + GG II+Q GE V+YDA +RR+AR+  F+G DG+WRWS VS +L ++W+R+QGVR   S+ D WV VP   
Subjt:  MRDRDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPK

Query:  GEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF
          FSI SA EAIRP S +V W+GLLWGGGNIP+HSF  WL I+DRLGTRDRLSRWDSSIP SC+LC    ESRDHLFF
Subjt:  GEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF

XP_031745548.1 uncharacterized protein LOC116405965 [Cucumis sativus]3.4e-5966.03Show/hide
Query:  VWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPKGEFSISSAWEAIRPRSEKVCWA
        VWL PW+ GG II+Q G+ V+YD  +R +AR+  F+G DG+WRW  VS +L ++W+RVQGVR   S+ DRWVWV      FSI+SAWE IRP S +V W+
Subjt:  VWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPKGEFSISSAWEAIRPRSEKVCWA

Query:  GLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF
        GLLWGGGNIP+HSFCAWL IRDRLGTRDRLSRWD SIP SCLLC G  ESRDHLFF
Subjt:  GLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF

TrEMBL top hitse value%identityAlignment
A0A5A7TKU4 Non-LTR retroelement reverse transcriptase-like protein1.7e-7268.54Show/hide
Query:  MRDRDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPK
        +R RD  + HV +EVGDG  CRVWLDPWL G  I+ Q+GE V+YDAA+RREAR+S+FIG DGEW+W RVS EL +LW+RVQ VR CLS+ DRWVWVP  +
Subjt:  MRDRDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPK

Query:  GEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF
        G FSI+SA + IRPR  +V W GLLWGGGN+P+HSFCAWL I+++LGTRDRL RWDSS+P S +LCQGGVESRDHLFF
Subjt:  GEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF

A0A5A7TZS0 Reverse transcriptase domain-containing protein4.4e-5772.34Show/hide
Query:  MGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPKGEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFC
        +GE V+YDAA+RREA++S FI  +GEW W RVS EL +LWERVQ V  CLS+ D WVWVP  +G FSI+SAWEAI PR  +V W GLLWGGGNIP+HSFC
Subjt:  MGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPKGEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFC

Query:  AWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF
        AWL I+DRL TRDRL RWDSSIP SC+LCQGGVESRDHLFF
Subjt:  AWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF

A0A5A7UP65 Reverse transcriptase1.1e-5557.3Show/hide
Query:  MRDRDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPK
        +R ++  ++HV M+VG+G  CRVWLDPWL  GAI+ Q+GE V+YDAA+RREA +S FIG DGEW W                                P+
Subjt:  MRDRDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPK

Query:  GEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF
        G FSI+SAWEAIRPR  +V W GLLWGGGNIP+HSFCAWL I+DRLGTRDR  RWDSS+P SC+LC+GG+ESRDHLFF
Subjt:  GEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF

A0A5A7V3Z0 Reverse transcriptase domain-containing protein1.7e-6456.81Show/hide
Query:  MRDRDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPK
        +R R+  +  V M+VG+G   RVWLDPWL  GAI+ Q+GE V+YDAA+RR+AR+S FI  DGEW W RVS EL +LWERVQ V  CLS+ D WVWVP  +
Subjt:  MRDRDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPK

Query:  GEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFFLVLLGMISGLVLFGIWRPLIGL
        G FSI+SAWEA+RPR  +V W GLLWGGGNI +H FCAWL I+DRLGT DRL RWDSS+P  C+L                         FG W PLIGL
Subjt:  GEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFFLVLLGMISGLVLFGIWRPLIGL

Query:  GGGRLSCLGSVVR
        G G LSCLG V++
Subjt:  GGGRLSCLGSVVR

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein1.9e-6066.67Show/hide
Query:  DGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPKGEFSISSAWEAIRPRS
        D R  R W    +  GAI+ Q+GE V+YDAA+RREAR+S FIG +GEW WSRV  EL  LW+RVQ V  CLS+ D WVWVP  +G FSI+SAW+AIRPR 
Subjt:  DGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPKGEFSISSAWEAIRPRS

Query:  EKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF
         +V W GLLWGG NIP+HSFCAWL I+DRLGTRDRL RWDSS+P  C+LC+GGVESRDHLFF
Subjt:  EKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.2e-1830.34Show/hide
Query:  RDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVW---VPSPK
        R++ R  V  +VG G   + W D W   G +I  +G L              + +GL  +                  G+  C    D ++W   + +P 
Subjt:  RDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVW---VPSPK

Query:  GEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF
          FS +    A+ P++  V W   +W   ++P+H+F  W+V  +RL TRDRL  W  SIP  CLLC    ESR HLFF
Subjt:  GEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF

AT1G60720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.7e-2133.15Show/hide
Query:  RDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWR--WSRVSRELFELWERVQGVR--SCLSIGDRWVWVPSP
        R +  + V   +G+GR    W D W   G +I+ MG+           ARV + +G++G W+   SR S     + + +  +   S  +I D + WV   
Subjt:  RDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWR--WSRVSRELFELWERVQGVR--SCLSIGDRWVWVPSP

Query:  K--GEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF
             FS +  W+AIRPR+ ++ WA  +W  G +P+H+F  W+   DRL TR RL+ W       C LC    ESRDHL F
Subjt:  K--GEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.3e-2433.88Show/hide
Query:  RDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSR-----ELFELWERVQGVRSCLSIGDRWVW---
        R + R  +  EVG G   + W D W+  G +I  +G L         +A V   +     W  S  SR     +L  L    QG+  C    D ++W   
Subjt:  RDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSR-----ELFELWERVQGVRSCLSIGDRWVW---

Query:  VPSPKGEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF
        + +P   FS    W A+ P+S  V W   +W   ++P+H+F  W+V  +RL TRDRL  W  SIP  CLLC    +SR HLFF
Subjt:  VPSPKGEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.7e-2434.39Show/hide
Query:  RDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIG-----------DR
        R + RE V  +VG G  C  W + W + G +I   G+L    +   R A V+  +  DG W W   SR    +   +Q +++CL +            D 
Subjt:  RDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIG-----------DR

Query:  WVW-VPSPKGEFSISSA--WEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF
        ++W V   +     SSA  W  + P  EKV W   +W  G IP+H+F +W+ IR RL TRD+L  W   +P  CLLC    E+R HLFF
Subjt:  WVW-VPSPKGEFSISSA--WEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF

AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.1e-1830.56Show/hide
Query:  EHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELW----------ERVQGVRSCLSIGDRWVWVPS
        E +  ++G+G     W D W   G ++  +G         R++ARV +    +G+W       +  +L+             +G  S L       ++PS
Subjt:  EHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELW----------ERVQGVRSCLSIGDRWVWVPS

Query:  PKGEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF
            FS    WE IR  S  V WA ++W    IPR S   W+   +RL TRDRL  W  +IP S +LC  G E+  HLFF
Subjt:  PKGEFSISSAWEAIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGATCGTGATATCTTTAGAGAGCATGTCCATATGGAGGTTGGTGATGGTAGGTGTTGTCGTGTGTGGCTTGACCCTTGGCTGCACGGAGGAGCGATCATTCGGCA
GATGGGCGAGCTGGTGGTGTATGATGCTGCGACTAGAAGGGAGGCTAGGGTTTCTAAGTTCATTGGCTTGGATGGCGAGTGGAGGTGGTCGAGGGTTTCTAGGGAGTTGT
TTGAGTTGTGGGAGAGGGTTCAAGGCGTCCGTTCTTGTTTGAGTATTGGGGATCGCTGGGTATGGGTTCCGAGTCCTAAGGGTGAGTTTTCGATTTCGAGTGCATGGGAG
GCTATTCGTCCTAGGAGTGAAAAGGTTTGTTGGGCTGGTCTGCTGTGGGGTGGGGGAAATATTCCGAGACATTCTTTTTGTGCTTGGTTGGTTATTAGGGATAGGTTGGG
CACTCGGGATAGGTTGAGTAGGTGGGATAGTTCGATTCCTCGATCGTGTCTTCTTTGCCAGGGGGGTGTTGAATCTCGGGATCATCTGTTTTTTCTTGTCCTTTTGGGTA
TGATATCTGGACTCGTATTATTCGGGATATGGCGTCCTCTCATAGGGTTGGGGGGTGGGAGGTTGAGTTGTCTTGGGTCAGTCGTAAGGGTATTGGGAAGGGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGATCGTGATATCTTTAGAGAGCATGTCCATATGGAGGTTGGTGATGGTAGGTGTTGTCGTGTGTGGCTTGACCCTTGGCTGCACGGAGGAGCGATCATTCGGCA
GATGGGCGAGCTGGTGGTGTATGATGCTGCGACTAGAAGGGAGGCTAGGGTTTCTAAGTTCATTGGCTTGGATGGCGAGTGGAGGTGGTCGAGGGTTTCTAGGGAGTTGT
TTGAGTTGTGGGAGAGGGTTCAAGGCGTCCGTTCTTGTTTGAGTATTGGGGATCGCTGGGTATGGGTTCCGAGTCCTAAGGGTGAGTTTTCGATTTCGAGTGCATGGGAG
GCTATTCGTCCTAGGAGTGAAAAGGTTTGTTGGGCTGGTCTGCTGTGGGGTGGGGGAAATATTCCGAGACATTCTTTTTGTGCTTGGTTGGTTATTAGGGATAGGTTGGG
CACTCGGGATAGGTTGAGTAGGTGGGATAGTTCGATTCCTCGATCGTGTCTTCTTTGCCAGGGGGGTGTTGAATCTCGGGATCATCTGTTTTTTCTTGTCCTTTTGGGTA
TGATATCTGGACTCGTATTATTCGGGATATGGCGTCCTCTCATAGGGTTGGGGGGTGGGAGGTTGAGTTGTCTTGGGTCAGTCGTAAGGGTATTGGGAAGGGTGTGA
Protein sequenceShow/hide protein sequence
MRDRDIFREHVHMEVGDGRCCRVWLDPWLHGGAIIRQMGELVVYDAATRREARVSKFIGLDGEWRWSRVSRELFELWERVQGVRSCLSIGDRWVWVPSPKGEFSISSAWE
AIRPRSEKVCWAGLLWGGGNIPRHSFCAWLVIRDRLGTRDRLSRWDSSIPRSCLLCQGGVESRDHLFFLVLLGMISGLVLFGIWRPLIGLGGGRLSCLGSVVRVLGRV