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PI0019733 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019733
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:20569031..20569940
RNA-Seq ExpressionPI0019733
SyntenyPI0019733
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]8.8e-6072.78Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPNDKCP +IE+ N++RKYDP+ NTYNSGWRDNPNLRWGNDN K +QA  +S+NQGTNLED++KALATNT SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ

Query:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKKKIDQFL
        QEMKQQ++ LTTAI K++ KGKLP QPD AN+SAISLRSGK L+TP ++EKK   + L
Subjt:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKKKIDQFL

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.4e-5974.34Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ
        MTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP +IE+ N++RKYDPH NTYNSGWRDNPNLRWGNDN K +QA S+S+NQGTNLED++KALATNT SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ

Query:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKK
        QEMKQQ++ LTTAI K++ KGKL  Q + AN+SA+SLRSGK L+TP ++EKK
Subjt:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKK

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-6070.83Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ
        MTTLLTSFVQG   KV KCGVCGLVGHPNDKC  +IE+ N++R+YDPHSNTYNSGWRDNPNLRWGNDN K +QA S+S+NQGTNLED++KAL TNT SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ

Query:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKKK---IDQFLMQCFTEE
        QEMKQQ++ LTTAI K++ KGKLP QPD AN+SAISLRSGK L+TP ++EKKK    ++ L++ F +E
Subjt:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKKK---IDQFLMQCFTEE

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.2e-6075.66Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ
        MTTLLTSFVQG   KV KCGVCGLVGHPNDKCP +IE+ N++R+YDPHSNTYNSGWRDN NLRWGNDN K +QA S+S+NQGTNLED++KALATNT SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ

Query:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKK
        Q+MKQQ++ LTTAI K++ KGKLP QPD AN+SAISLRSGK L+TP ++EKK
Subjt:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKK

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]9.8e-5970.25Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ
        MTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP +IE+ N++R+YDPH NTYN GWRDNPNLRWGNDN K +QA  +S+NQGTNLED++KALATNT SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ

Query:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKKKIDQFL
        Q+MKQQ++ LTT I K++ KGKLP QPD  N+SAISLRSGK L+TP ++EKK   + L
Subjt:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKKKIDQFL

TrEMBL top hitse value%identityAlignment
A0A5A7V0Q7 Retrotransposon gag protein5.0e-6170.83Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ
        MTTLLTSFVQG   KV KCGVCGLVGHPNDKC  +IE+ N++R+YDPHSNTYNSGWRDNPNLRWGNDN K +QA S+S+NQGTNLED++KAL TNT SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ

Query:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKKK---IDQFLMQCFTEE
        QEMKQQ++ LTTAI K++ KGKLP QPD AN+SAISLRSGK L+TP ++EKKK    ++ L++ F +E
Subjt:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKKK---IDQFLMQCFTEE

A0A5A7VQ60 Retrotransposon gag protein4.7e-5974.83Show/hide
Query:  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQQ
        TTLLTSFVQG  +KV KCGVCGLVGH N+KCP +IE+ N++R+YDPHSNTYNSGWRDNPNLRWGNDN K +QA S+S+NQGTNLED++KALATNT SFQQ
Subjt:  TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQQ

Query:  EMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKK
        EMKQQ++ LTTAI K++ KGKLP Q D AN+SAISLRSGK L+TP ++EKK
Subjt:  EMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKK

A0A5D3CB46 Retrotransposon gag protein2.5e-6075.66Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ
        MTTLLTSFVQG   KV KCGVCGLVGHPNDKCP +IE+ N++R+YDPHSNTYNSGWRDN NLRWGNDN K +QA S+S+NQGTNLED++KALATNT SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ

Query:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKK
        Q+MKQQ++ LTTAI K++ KGKLP QPD AN+SAISLRSGK L+TP ++EKK
Subjt:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKK

A0A5D3CRR8 Retrotransposon gag protein1.6e-5974.34Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ
        MTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP +IE+ N++RKYDPH NTYNSGWRDNPNLRWGNDN K +QA S+S+NQGTNLED++KALATNT SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ

Query:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKK
        QEMKQQ++ LTTAI K++ KGKL  Q + AN+SA+SLRSGK L+TP ++EKK
Subjt:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKK

E5GBZ4 Retrotransposon gag protein4.3e-6072.78Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPNDKCP +IE+ N++RKYDP+ NTYNSGWRDNPNLRWGNDN K +QA  +S+NQGTNLED++KALATNT SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQ

Query:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKKKIDQFL
        QEMKQQ++ LTTAI K++ KGKLP QPD AN+SAISLRSGK L+TP ++EKK   + L
Subjt:  QEMKQQISHLTTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKKKIDQFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTTTACTCACTTCTTTTGTGCAAGGTGGCTCTGTAAAAGTTGCTAAGTGTGGGGTGTGCGGCCTAGTTGGACATCCAAATGACAAGTGCCCATACTTAATTGA
AGAAGCAAATGTCATTCGTAAGTACGATCCCCATAGTAATACTTACAATTCTGGGTGGAGAGACAACCCAAATCTAAGGTGGGGAAATGACAACCATAAGCCTTCACAAG
CAACTTCTTCTTCCAATAATCAAGGTACAAATCTTGAAGATCTAGTAAAAGCTCTAGCTACTAATACCTTCTCTTTCCAACAAGAAATGAAGCAACAAATTTCTCATCTC
ACAACCGCAATTGGTAAGTTAGAAGAAAAAGGTAAACTTCCGGTCCAACCGGATCGTGCAAATATAAGTGCCATCTCACTTAGAAGTGGTAAGACTCTTGAAACCCCTCC
AAGTGAAGAAAAAAAGAAAATAGACCAATTTCTCATGCAATGCTTCACTGAGGAGCATCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTTTACTCACTTCTTTTGTGCAAGGTGGCTCTGTAAAAGTTGCTAAGTGTGGGGTGTGCGGCCTAGTTGGACATCCAAATGACAAGTGCCCATACTTAATTGA
AGAAGCAAATGTCATTCGTAAGTACGATCCCCATAGTAATACTTACAATTCTGGGTGGAGAGACAACCCAAATCTAAGGTGGGGAAATGACAACCATAAGCCTTCACAAG
CAACTTCTTCTTCCAATAATCAAGGTACAAATCTTGAAGATCTAGTAAAAGCTCTAGCTACTAATACCTTCTCTTTCCAACAAGAAATGAAGCAACAAATTTCTCATCTC
ACAACCGCAATTGGTAAGTTAGAAGAAAAAGGTAAACTTCCGGTCCAACCGGATCGTGCAAATATAAGTGCCATCTCACTTAGAAGTGGTAAGACTCTTGAAACCCCTCC
AAGTGAAGAAAAAAAGAAAATAGACCAATTTCTCATGCAATGCTTCACTGAGGAGCATCCATAA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPYLIEEANVIRKYDPHSNTYNSGWRDNPNLRWGNDNHKPSQATSSSNNQGTNLEDLVKALATNTFSFQQEMKQQISHL
TTAIGKLEEKGKLPVQPDRANISAISLRSGKTLETPPSEEKKKIDQFLMQCFTEEHP