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PI0019781 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019781
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr01:6205230..6206869
RNA-Seq ExpressionPI0019781
SyntenyPI0019781
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-4773.73Show/hide
Query:  KVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI
        KV KCGVCGL+GHPNDKCL ++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AI
Subjt:  KVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI

Query:  SKLEGKGKLPAQPDHANI
        SK++GKGKLPAQPD+AN+
Subjt:  SKLEGKGKLPAQPDHANI

KAA0062400.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.2e-4770.49Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCL+++E+ N++R+Y+PHGNTYN+ WR+ PNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANI
        T AISK++GKGKLPAQPDHAN+
Subjt:  TNAISKLEGKGKLPAQPDHANI

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-4772.13Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G   KV KCGVCGL+GHPNDKC +++E+ N++R+YDPHGNTYN GWRD PNLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANI
        T AISK++GKGKLPAQPDHAN+
Subjt:  TNAISKLEGKGKLPAQPDHANI

TYK26581.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.2e-4770.49Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCL+++E+ N++R+Y+PHGNTYN+ WR+ PNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANI
        T AISK++GKGKLPAQPDHAN+
Subjt:  TNAISKLEGKGKLPAQPDHANI

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]5.2e-4771.31Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKC +++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANI
        T  ISK++GKGKL AQPDHAN+
Subjt:  TNAISKLEGKGKLPAQPDHANI

TrEMBL top hitse value%identityAlignment
A0A5A7V0Q7 Retrotransposon gag protein5.1e-4873.73Show/hide
Query:  KVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI
        KV KCGVCGL+GHPNDKCL ++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AI
Subjt:  KVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI

Query:  SKLEGKGKLPAQPDHANI
        SK++GKGKLPAQPD+AN+
Subjt:  SKLEGKGKLPAQPDHANI

A0A5A7V594 Retrotransposon gag protein2.5e-4770.49Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCL+++E+ N++R+Y+PHGNTYN+ WR+ PNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANI
        T AISK++GKGKLPAQPDHAN+
Subjt:  TNAISKLEGKGKLPAQPDHANI

A0A5D3CFE7 Retrotransposon gag protein8.6e-4872.13Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G   KV KCGVCGL+GHPNDKC +++E+ N++R+YDPHGNTYN GWRD PNLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANI
        T AISK++GKGKLPAQPDHAN+
Subjt:  TNAISKLEGKGKLPAQPDHANI

A0A5D3DCG3 Retrotransposon gag protein2.5e-4771.31Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKC +++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANI
        T  ISK++GKGKL AQPDHAN+
Subjt:  TNAISKLEGKGKLPAQPDHANI

A0A5D3DS57 Retrotransposon gag protein2.5e-4770.49Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+GHPNDKCL+++E+ N++R+Y+PHGNTYN+ WR+ PNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNVKVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANI
        T AISK++GKGKLPAQPDHAN+
Subjt:  TNAISKLEGKGKLPAQPDHANI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCTCGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCACGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAGCAACTT
CATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAATCTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTAACCAAC
GCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCACAGCCCGATCACGCAAATATTGGCCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCTCGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCACGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAGCAACTT
CATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAATCTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTAACCAAC
GCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCACAGCCCGATCACGCAAATATTGGCCCCTAA
Protein sequenceShow/hide protein sequence
MAPLPGSDGGNVKVAKCGVCGLIGHPNDKCLDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTN
AISKLEGKGKLPAQPDHANIGP