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PI0019795 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019795
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Genome locationchr02:19858654..19860488
RNA-Seq ExpressionPI0019795
SyntenyPI0019795
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
InterPro domainsIPR029071 - Ubiquitin-like domain superfamily
IPR039690 - U11/U12 small nuclear ribonucleoprotein 25kDa protein
IPR040610 - SNRNP25, ubiquitin-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443963.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucumis melo]3.1e-6088.37Show/hide
Query:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL
        MS+IEPIVPDSCCISPRF +NSFRRSLRYNRLPPQLLRLS+LKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED NISWPHVWGHFCLCYKHFKL
Subjt:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL

Query:  MDDKSCIQHFGIRDGDQLHFVGLRCSVKE
        MDDKS IQHFGIRDGDQ+    L C+  E
Subjt:  MDDKSCIQHFGIRDGDQLHFVGLRCSVKE

XP_008443964.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo]9.2e-6593.02Show/hide
Query:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL
        MS+IEPIVPDSCCISPRF +NSFRRSLRYNRLPPQLLRLS+LKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED NISWPHVWGHFCLCYKHFKL
Subjt:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL

Query:  MDDKSCIQHFGIRDGDQLHFVGLRCSVKE
        MDDKS IQHFGIRDGDQLHFV LRC V+E
Subjt:  MDDKSCIQHFGIRDGDQLHFVGLRCSVKE

XP_011655436.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus]7.0e-6593.02Show/hide
Query:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL
        MS IEPIVPDSCCISPRF SNSFRRSLRYNRLPPQLLRLS+LKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED NISWPHVWGHFCLCYKHFKL
Subjt:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL

Query:  MDDKSCIQHFGIRDGDQLHFVGLRCSVKE
        MDDKS IQHFGIRDGDQLHFV LRC ++E
Subjt:  MDDKSCIQHFGIRDGDQLHFVGLRCSVKE

XP_023531556.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo]1.3e-5080.17Show/hide
Query:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL
        MSRIEP +PDSCCISPRFRSNSFRRSLRY RLP +LL LS+LKLDGSSFEVQV R A+VA +R+AVESVFC MSMN+EDV ISWPHVW HFCLCYKH+KL
Subjt:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL

Query:  MDDKSCIQHFGIRDGDQLHFV
        +D+KS I+ FGIRDGD LHFV
Subjt:  MDDKSCIQHFGIRDGDQLHFV

XP_038880358.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida]6.6e-5587.29Show/hide
Query:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL
        MSRIEP+VPDSCCISPRFRSNSFRRS RY +LPPQL+RLS+LKLDGSSFEVQ+ RTATVAAVRDAVESVFC MSMNKED  ISWPHVWGHFCLCYKHFKL
Subjt:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL

Query:  MDDKSCIQHFGIRDGDQL
        +DDKS I+HFGIRDGDQ+
Subjt:  MDDKSCIQHFGIRDGDQL

TrEMBL top hitse value%identityAlignment
A0A0A0LT94 Ubiquitin_4 domain-containing protein3.4e-6593.02Show/hide
Query:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL
        MS IEPIVPDSCCISPRF SNSFRRSLRYNRLPPQLLRLS+LKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED NISWPHVWGHFCLCYKHFKL
Subjt:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL

Query:  MDDKSCIQHFGIRDGDQLHFVGLRCSVKE
        MDDKS IQHFGIRDGDQLHFV LRC ++E
Subjt:  MDDKSCIQHFGIRDGDQLHFVGLRCSVKE

A0A1S3B9C0 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X11.5e-6088.37Show/hide
Query:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL
        MS+IEPIVPDSCCISPRF +NSFRRSLRYNRLPPQLLRLS+LKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED NISWPHVWGHFCLCYKHFKL
Subjt:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL

Query:  MDDKSCIQHFGIRDGDQLHFVGLRCSVKE
        MDDKS IQHFGIRDGDQ+    L C+  E
Subjt:  MDDKSCIQHFGIRDGDQLHFVGLRCSVKE

A0A1S3BA12 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X24.5e-6593.02Show/hide
Query:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL
        MS+IEPIVPDSCCISPRF +NSFRRSLRYNRLPPQLLRLS+LKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED NISWPHVWGHFCLCYKHFKL
Subjt:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL

Query:  MDDKSCIQHFGIRDGDQLHFVGLRCSVKE
        MDDKS IQHFGIRDGDQLHFV LRC V+E
Subjt:  MDDKSCIQHFGIRDGDQLHFVGLRCSVKE

A0A5A7U4H4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X24.5e-6593.02Show/hide
Query:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL
        MS+IEPIVPDSCCISPRF +NSFRRSLRYNRLPPQLLRLS+LKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED NISWPHVWGHFCLCYKHFKL
Subjt:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL

Query:  MDDKSCIQHFGIRDGDQLHFVGLRCSVKE
        MDDKS IQHFGIRDGDQLHFV LRC V+E
Subjt:  MDDKSCIQHFGIRDGDQLHFVGLRCSVKE

A0A6J1EHC7 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like2.4e-5079.34Show/hide
Query:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL
        M RIEP +PDSCCISPRFRSNSFRRSLRY RLP +LL LS+LKLDGSSFEVQV R A+VA +R+AVESVFC MSMN+EDV ISWPHVW HFCLCYKH+KL
Subjt:  MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKL

Query:  MDDKSCIQHFGIRDGDQLHFV
        +D+KS I+ FGIRDGD LHFV
Subjt:  MDDKSCIQHFGIRDGDQLHFV

SwissProt top hitse value%identityAlignment
Q3ZBQ4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein6.5e-0528.09Show/hide
Query:  QLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--VNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHFV
        Q + + + K+DG    V V + ATV  ++ A++  + ++   +E    +ISW +VW  + L     KL +D+  ++ +GIR+ D++ F+
Subjt:  QLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--VNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHFV

Q84WS8 U11/U12 small nuclear ribonucleoprotein 25 kDa protein1.2e-1140.7Show/hide
Query:  LRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHFV
        +RLS++KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL   + KL+DD + +Q  GIR+  Q+ F+
Subjt:  LRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHFV

Q8VIK1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein5.0e-0528.09Show/hide
Query:  QLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--VNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHFV
        Q + + + K+DG    V V + ATV  ++ A++  + ++   +E    +ISW +VW  + L     KL +D+  ++ +GIR+ D++ F+
Subjt:  QLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--VNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHFV

Q9BV90 U11/U12 small nuclear ribonucleoprotein 25 kDa protein3.8e-0528.09Show/hide
Query:  QLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--VNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHFV
        Q + + + K+DG    V V ++ATV  ++ A++  + ++   +E    +ISW +VW  + L     KL +D+  ++ +GIR+ D++ F+
Subjt:  QLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--VNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHFV

Arabidopsis top hitse value%identityAlignment
AT1G80060.1 Ubiquitin-like superfamily protein9.3e-2347.46Show/hide
Query:  ISPRFRSN---------SFRRSLRYNRLPPQ-LLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDD
        I PRF S+         S RRS  Y +LPPQ  ++LS++KL+GS F+V+V +  +VA ++ AVE VF    +    + ISW HVWGHFCLCY+  +L++D
Subjt:  ISPRFRSN---------SFRRSLRYNRLPPQ-LLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDD

Query:  KSCIQHFGIRDGDQLHFV
        K+ I++ G+ DGDQLHFV
Subjt:  KSCIQHFGIRDGDQLHFV

AT3G07860.1 Ubiquitin-like superfamily protein8.7e-1340.7Show/hide
Query:  LRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHFV
        +RLS++KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL   + KL+DD + +Q  GIR+  Q+ F+
Subjt:  LRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHFV

AT4G32270.1 Ubiquitin-like superfamily protein4.2e-2347.96Show/hide
Query:  RRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHFV
        RRS  YN++P + ++L++LKLDGSSF +QV +TATV  ++ AVE+ F  + ++     ISWPHVWG FCL Y+  +L+++   +  FGI+DGDQL F+
Subjt:  RRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHFV

AT4G32270.2 Ubiquitin-like superfamily protein1.2e-1745.56Show/hide
Query:  LPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHFV
        +P + ++L++LKLDGSSF   V +TATV  ++ AVE+ F  + ++     ISWPHVWG FCL Y+  +L+++   +  FGI+DGDQL F+
Subjt:  LPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHFV

AT5G25340.1 Ubiquitin-like superfamily protein2.1e-2248.45Show/hide
Query:  RRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHF
        RR+  Y++LP + +RLS+LKLDGSSF+V V  +ATV  ++ A+E+ F  +   K    ISW HVWGHFCLC+   KL+ D  CI ++G++DGD++ F
Subjt:  RRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHFGIRDGDQLHF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCGCATTGAACCTATTGTCCCCGATTCTTGCTGTATCTCCCCTCGCTTTCGTAGCAACAGTTTTCGCCGCTCTCTTCGCTACAATCGCCTTCCGCCACAGCTCCT
CCGCCTCTCCATCTTGAAATTGGACGGCTCTTCTTTCGAGGTGCAAGTTGAAAGGACGGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGT
CGATGAATAAAGAAGATGTCAATATTTCTTGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTTGTATTCAACATTTC
GGAATTCGTGATGGTGATCAGCTGCATTTTGTGGGATTGAGATGTTCCGTAAAGGAATAA
mRNA sequenceShow/hide mRNA sequence
TGTCAATTTCTCTTTCACTCTCTCAATTTCTTCCCTATTTTTCCAAACCCTAAACACTCTGCTCTTCAAATATTTCATTACTATATTCCAAATCTCAAATCCTCCATTAT
TCCTCAATAATCAATCTCATCATATATTCTTCATGTCTCGCATTGAACCTATTGTCCCCGATTCTTGCTGTATCTCCCCTCGCTTTCGTAGCAACAGTTTTCGCCGCTCT
CTTCGCTACAATCGCCTTCCGCCACAGCTCCTCCGCCTCTCCATCTTGAAATTGGACGGCTCTTCTTTCGAGGTGCAAGTTGAAAGGACGGCGACGGTGGCCGCGGTTAG
AGATGCGGTGGAGAGTGTTTTCTGTGAAATGTCGATGAATAAAGAAGATGTCAATATTTCTTGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGC
TCATGGACGACAAATCTTGTATTCAACATTTCGGAATTCGTGATGGTGATCAGCTGCATTTTGTGGGATTGAGATGTTCCGTAAAGGAATAAATAGATATGTAGAAAGAA
ATATAGAAAGGTTGAAGAGATGAACGGCTTCTGGTATAAAGTGGTCAGAAGTTTTTGGGCGTGAATTATTATTATAAATTGGTTTGATGATGGATCTTTTTTCTTCTATT
TTTCTGATGTTAAATTGGAAGTTTTGGTATATTTATATACAGTATGAAGTAAAGTTCATTGCGGTCATGTTTGGATTGATTTTCTAAATATTTATAAGTGCAAAGAAATG
TTTATAAACTATTAGAAAGTTAATCCAAATGGATCCTTCATTTATGTCATTCAACAATGTACTTTTCCTTTGTTTCAATTTAGAAATATAATCCATCAGTCTCTAAGATA
CTTAATTACTTTAAGAGAAAAACAAAAGAGAGAATAGCGATCATACTCTTCTTTGTTTTTTGATCTCAGATGGTGAATCTCATTGCCTTGTCTAAC
Protein sequenceShow/hide protein sequence
MSRIEPIVPDSCCISPRFRSNSFRRSLRYNRLPPQLLRLSILKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDVNISWPHVWGHFCLCYKHFKLMDDKSCIQHF
GIRDGDQLHFVGLRCSVKE